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[184470_at]

Description Y75B8A.19 /REP_DB=WormBase Gene ID /WP=CE23030 /TR=Q9XW67 /GB=CAA22104.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 22.2
(-2.3)
A 		57.6
(2.3)
A 		16.3
(-3)
A 		63.5
(3)
A 		47
B 45.4
(0)
A 		78.8
(3)
A 		11.8
(-3)
A 		41.3
(-0.4)
A 		67
C 85.6
(1.5)
A 		15
(-3)
A 		22.3
(-2.5)
A 		108.9
(3)
A 		94
avr 51.1
(0.8) 		50.5
(0.7) 		16.8
(-3) 		71.2
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 30.3
(0.7)
A 		2.8
(-3)
A 		47.5
(3)
A 		9
(-2.2)
A 		17.6
(-1)
A 		8.9
(-2.2)
A 		45
B 6.1
(-3)
A 		6.8
(-2.8)
A 		7.8
(-2.5)
A 		26.6
(3)
A 		23.4
(2.1)
A 		6.4
(-2.9)
A 		21
C 6.3
(-3)
A 		9.5
(-2.5)
A 		34.3
(1.1)
A 		11.5
(-2.2)
A 		11.4
(-2.2)
A 		47
(3)
A 		41
avr 14.2
(-1) 		6.4
(-3) 		29.9
(3) 		15.7
(-0.6) 		17.5
(-0.2) 		20.8
(0.7) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 8.1
(-0.2)
A 		12.5
(3)
A 		4.3
(-3)
A 		9.3
(0.7)
A 		8
B 14.5
(1.2)
A 		19.5
(3)
A 		2.7
(-3)
A 		8.8
(-0.8)
A 		17
C 28.3
(3)
A 		4.3
(-3)
A 		7.8
(-2.1)
A 		18.4
(0.5)
A 		24
avr 17
(3) 		12.1
(0.6) 		4.9
(-3) 		12.2
(0.6) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 5.6
(-0)
A 		1
(-3)
A 		10.3
(3)
A 		2.3
(-2.2)
A 		5.3
(-0.2)
A 		2.2
(-2.2)
A 		9
B 2.1
(-2.8)
A 		2.3
(-2.7)
A 		1.9
(-3)
A 		7
(1)
A 		9.5
(3)
A 		2.4
(-2.6)
A 		8
C 2.4
(-3)
A 		2.9
(-2.7)
A 		8.7
(-0.1)
A 		2.3
(-3)
A 		3.7
(-2.4)
A 		15.7
(3)
A 		13
avr 3.4
(-1.4) 		2.1
(-3) 		7
(3) 		3.9
(-0.8) 		6.2
(2) 		6.8
(2.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184470_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6166
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.19 NCBI
Target Description Y75B8A.19 /REP_DB=WormBase Gene ID /WP=CE23030 /TR=Q9XW67 /GB=CAA22104.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067190(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067190 NCBI Caenorhabditis elegans Y75B8A.19 (Y75B8A.19) mRNA, complete cds. 11/11 None
GENEFINDER00000020194 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12226519:12232185:1 11/11 None
SNAP00000020084 ENSEMBL cdna:SNAP chromosome:CEL140:III:12226543:12239099:1 11/11 None
Y75B8A.19 ENSEMBL cdna:known chromosome:CEL140:III:12226543:12231993:1 gene:Y75B8A.19 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12226538-12231989(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B8A.19
Entrez Gene 190706 Entrez gene
SwissProt Q9XW67 EMBL-EBI
WormBase CE23030 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22104 Hypothetical protein Y75B8A.19 [Caenorhabditis elegans] ref|NP_499591.1| Y75B8A.19 [Caenorhabditis elegans] 0.0
blast CAE75123 Hypothetical protein CBG23051 [Caenorhabditis briggsae] 5.0E-20
blast CAA22464 Hypothetical protein Y7A5A.3 [Caenorhabditis elegans] ref|NP_510597.2| Y7A5A.3 [Caenorhabditis elegans] 4.0E-12
Sequence
Target Sequence 
>C. ELEGANS:184470_AT
aatgcggccggttgtactggatgtcatgtgtcaaagagcgacaccagcgaattaccagga
aattctagagatctacagctatgagccggatatggtcaccaaaatggtccaaaagtaccc
atatattttactgttcacaccacacgtcactcgaccaccgataaagcttatcagagattt
ttccgagtacatggagaaggaaatgatgagcagtgagcaagcacaaatgagccgagtgga
tgtcattgttttggaggaaaatgagccagatggtcaggaatccggtgtagattatatact
agctaggagcaataagcgagctcgtgtggattttgaaaaattggatttgctgctcgaaag
tataatgccagaggaagcgccggcaagggactaccgaaaaaatacctctgaaggacacct
tgccgaaatttttgggccaacgaataatgaagaagctgaagaagagccctcactaccatc
atgctcatattcaacaccaaaacgagtaaaccgcgcgaaaccagcattggacagcccgtc
tggaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCGGCCGGTTGTACTGGATGTC 250 167 1476 Antisense
GAGCGACACCAGCGAATTACCAGGA 168 385 1511 Antisense
GCTATGAGCCGGATATGGTCACCAA 683 303 1553 Antisense
ATATTTTACTGTTCACACCACACGT 47 19 1598 Antisense
GTCACTCGACCACCGATAAAGCTTA 580 463 1621 Antisense
AGGAAGCGCCGGCAAGGGACTACCG 48 1 1847 Antisense
GAAGGACACCTTGCCGAAATTTTTG 372 311 1885 Antisense
TGAAGAAGAGCCCTCACTACCATCA 281 575 1932 Antisense
ACCATCATGCTCATATTCAACACCA 114 87 1950 Antisense
TAAACCGCGCGAAACCAGCATTGGA 685 639 1982 Antisense
GCATTGGACAGCCCGTCTGGAAATT 442 307 1999 Antisense
Sequence Source Affymetrix Proprietary Database