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[184468_at]

Description Y102A5C.4 /REP_DB=WormBase Gene ID /WP=CE19290 /TR=Q9XX90 /GB=CAA20945.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 19.1
(-2.5)
A 		38.7
(-0.7)
A 		13.7
(-3)
A 		78
(3)
P 		64
B 24.4
(-1.1)
A 		41.6
(0.7)
P 		6
(-3)
A 		63
(3)
P 		57
C 22.4
(-2.4)
A 		41
(-0)
A 		18.2
(-3)
A 		63.9
(3)
A 		46
avr 22
(-2) 		40.4
(-0) 		12.6
(-3) 		68.3
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 14.9
(-3)
A 		21.6
(-1.9)
A 		21
(-2)
A 		42.9
(1.7)
A 		51
(3)
A 		32.2
(-0.1)
A 		36
B 23
(-3)
A 		35.6
(-1.4)
A 		22.7
(-3)
A 		69.7
(3)
A 		29.5
(-2.1)
A 		40
(-0.8)
P 		47
C 26.3
(-2.3)
A 		65.1
(3)
M 		33.2
(-1.4)
A 		58.7
(2.1)
A 		34.1
(-1.3)
A 		21.4
(-3)
A 		44
avr 21.4
(-3) 		40.8
(0.3) 		25.6
(-2.3) 		57.1
(3) 		38.2
(-0.2) 		31.2
(-1.4) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 7
(-0.4)
A 		8.4
(0.7)
A 		3.6
(-3)
A 		11.4
(3)
P 		8
B 7.8
(0.2)
A 		10.3
(1.5)
P 		1.4
(-3)
A 		13.4
(3)
P 		12
C 7.4
(-1.8)
A 		11.8
(3)
A 		6.3
(-3)
A 		10.8
(1.9)
A 		6
avr 7.4
(-0.3) 		10.2
(1.7) 		3.8
(-3) 		11.9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 2.7
(-3)
A 		7.7
(-0.6)
A 		4.6
(-2.1)
A 		10.9
(0.9)
A 		15.4
(3)
A 		7.8
(-0.6)
A 		13
B 8
(-1.8)
A 		11.8
(-0.1)
A 		5.5
(-3)
A 		18.5
(3)
A 		12
(0)
A 		14.9
(1.3)
P 		13
C 9.7
(-1.8)
A 		19.9
(3)
M 		8.4
(-2.4)
A 		11.8
(-0.8)
A 		11
(-1.2)
A 		7.2
(-3)
A 		13
avr 6.8
(-2.5) 		13.1
(2.5) 		6.2
(-3) 		13.7
(3) 		12.8
(2.3) 		10
(0) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184468_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13375
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.4 NCBI
Target Description Y102A5C.4 /REP_DB=WormBase Gene ID /WP=CE19290 /TR=Q9XX90 /GB=CAA20945.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074877(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074877 NCBI Caenorhabditis elegans Y102A5C.4 (Y102A5C.4) mRNA, complete cds. 11/11 None
SNAP00000003144 ENSEMBL cdna:SNAP chromosome:CEL140:V:16924866:16926836:1 11/11 None
GENEFINDER00000003182 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16924830:16926836:1 11/11 None
Y102A5C.4 ENSEMBL cdna:known chromosome:CEL140:V:16924830:16926836:1 gene:Y102A5C.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16924829-16926836(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y102A5C.4
Entrez Gene 190831 Entrez gene
SwissProt Q9XX90 EMBL-EBI
WormBase CE19290 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20945 Hypothetical protein Y102A5C.4 [Caenorhabditis elegans] ref|NP_507278.1| Y102A5C.4 [Caenorhabditis elegans] 0.0
blast CAB03810 Hypothetical protein B0462.1 [Caenorhabditis elegans] ref|NP_507588.1| B0462.1 [Caenorhabditis elegans] 1.0E-45
blast CAB03810 Hypothetical protein B0462.1 [Caenorhabditis elegans] ref|NP_507588.1| B0462.1 [Caenorhabditis elegans] 5.0E-31
blast AAF60895 Hypothetical protein Y94H6A.2 [Caenorhabditis elegans] ref|NP_500249.1| Y94H6A.2 [Caenorhabditis elegans] 3.0E-24
Protein Domains
Database ID Description E-Value
scop a.2.7.Methicillin resistance protein FemA probable tRNA-binding arm All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm 0.629999995231628
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 1.1E-7
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 1.0E-126
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 1.1E-7
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 2.6E-14
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000003144 1 130-152
Sequence
Target Sequence 
>C. ELEGANS:184468_AT
atagtctgtctacgtgccatgtacaatagcagaacaacttactgggcgtatatgcaaaat
atgattcaccacgtacaggacgtgtttgcagtgtgttcaaatgagagcaaagcgggaatt
ttgaaggacacactggaggagatcatgacaaacgacgctttctacataatcgtctttgac
tatatgagtttgtttggacaattcctcggcgtttacaaatgctatggattcagttatgcc
gacgagaaaaatgttctttcatcatacaatcgtggtaactgcaatgttgttctcttccgg
agcgtgggatttcaacgacaaaaaacatattcacaacaattgagaacgctgctgattact
catcaacccacactggtcaacatgcctctgtacagttggatttttcaaaataattacttg
tacacaactactgcaacgaaagacattcgagcaaaactcggcagcaattgtggtttcgtc
ggaattgtctgtgtggctcagaagccgtgtgtagaatgggcaaactgcgattttgaattc
gggcctggacatttcacaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGTCTGTCTACGTGCCATGTACA 163 23 1036 Antisense
GATCATGACAAACGACGCTTTCTAC 37 421 1176 Antisense
CGCTTTCTACATAATCGTCTTTGAC 453 255 1191 Antisense
TTGGACAATTCCTCGGCGTTTACAA 203 705 1229 Antisense
GCTATGGATTCAGTTATGCCGACGA 483 303 1256 Antisense
GTAACTGCAATGTTGTTCTCTTCCG 155 463 1310 Antisense
TTCTCTTCCGGAGCGTGGGATTTCA 703 687 1325 Antisense
CACTGGTCAACATGCCTCTGTACAG 393 199 1406 Antisense
ACTCGGCAGCAATTGTGGTTTCGTC 375 99 1491 Antisense
TCGTCGGAATTGTCTGTGTGGCTCA 97 605 1511 Antisense
ATTCGGGCCTGGACATTTCACAACT 428 7 1572 Antisense
Sequence Source Affymetrix Proprietary Database