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[184467_at]

Description Y37H2A.10 /REP_DB=WormBase Gene ID /WP=CE24207 /TR=Q9U2N3 /GB=CAB60577.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 32.2
(-0.6)
A 		23.7
(-1.9)
A 		17
(-3)
A 		55
(3)
A 		38
B 44.6
(2.6)
A 		46.8
(3)
M 		16.1
(-3)
A 		34.5
(0.6)
A 		31
C 22.3
(-3)
A 		34.5
(1.5)
A 		34.5
(1.5)
P 		38.5
(3)
A 		16
avr 33
(0.1) 		35
(0.7) 		22.5
(-3) 		42.7
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 47.2
(3)
A 		20.6
(-1.3)
A 		35.5
(1.1)
A 		10
(-3)
A 		38.8
(1.6)
P 		38.1
(1.5)
P 		37
B 39.9
(0.8)
A 		7.6
(-3)
A 		26.2
(-0.8)
A 		58.9
(3)
A 		37.8
(0.5)
M 		26.9
(-0.7)
P 		51
C 11.7
(-3)
A 		40.7
(0.2)
A 		28.9
(-1.1)
A 		66.1
(3)
A 		60.2
(2.3)
P 		32.4
(-0.7)
P 		54
avr 32.9
(-0.4) 		23
(-3) 		30.2
(-1.1) 		45
(2.8) 		45.6
(3) 		32.5
(-0.5) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.7
(3)
A 		5.1
(-2.4)
A 		4.4
(-3)
A 		8.1
(0)
A 		7
B 14.2
(3)
A 		11.6
(1.5)
M 		3.7
(-3)
A 		7.4
(-0.9)
A 		11
C 7.4
(-2)
A 		9.9
(0.7)
A 		12
(3)
P 		6.5
(-3)
A 		6
avr 11.1
(3) 		8.9
(0) 		6.7
(-3) 		7.3
(-2.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 8.7
(1)
A 		7.3
(0.1)
A 		7.7
(0.4)
A 		2.5
(-3)
A 		11.7
(3)
P 		9.3
(1.4)
P 		9
B 13.9
(2.2)
A 		2.5
(-3)
A 		6.4
(-1.2)
A 		15.6
(3)
A 		15.3
(2.9)
M 		10
(0.4)
P 		13
C 4.4
(-3)
A 		12.4
(0.2)
A 		7.3
(-1.8)
A 		13.3
(0.5)
A 		19.5
(3)
P 		10.8
(-0.5)
P 		15
avr 9
(-1.6) 		7.4
(-2.8) 		7.1
(-3) 		10.5
(-0.6) 		15.5
(3) 		10
(-0.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184467_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12548
Sequence Type Exemplar sequence
Representative Public ID Y37H2A.10 NCBI
Target Description Y37H2A.10 /REP_DB=WormBase Gene ID /WP=CE24207 /TR=Q9U2N3 /GB=CAB60577.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075141(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075141 NCBI Caenorhabditis elegans Y37H2A.10 (Y37H2A.10) mRNA, complete cds. 11/11 None
Y37H2A.10 ENSEMBL cdna:known chromosome:CEL140:V:18141569:18143261:1 gene:Y37H2A.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043013 4/11 Cross Hyb Matching Probes None
GENEFINDER00000043023 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18141568-18143261(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37H2A.10
Entrez Gene 189633 Entrez gene
SwissProt Q9U2N3 EMBL-EBI
WormBase CE24207 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60577 Hypothetical protein Y37H2A.10 [Caenorhabditis elegans] ref|NP_507542.1| Y37H2A.10 [Caenorhabditis elegans] 1.0E-80
blast CAB60578 Hypothetical protein Y37H2A.11 [Caenorhabditis elegans] ref|NP_507543.1| Y37H2A.11 [Caenorhabditis elegans] 9.0E-31
blast CAE58724 Hypothetical protein CBG01909 [Caenorhabditis briggsae] 2.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 2.0E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507542.1 1 15-34
Y37H2A.10 1 15-34
Sequence
Target Sequence 
>C. ELEGANS:184467_AT
tgccgcaatatctctcattgatccccccgtgtatacaaatgatcagtgccttttctattt
ttctcatctttattccctggacttttatccatgcatgcatacctacgcaacagattgaaa
cgactgtgacccccgattgcgtatcctgtacggttggcttgctcacattcaccaccgcaa
acttcggtgatatgacccctattcaaacacctggaaccgacgcaaataactgtgcaattc
ttactttgacgtgccaaggtacacctgttgatccactgaacaattactactcggattcta
aagtcccacgagatgctggcgcggatagcggtacaggatccatacagacggttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCGCAATATCTCTCATTGATCCC 403 585 14 Antisense
TTGATCCCCCCGTGTATACAAATGA 325 681 31 Antisense
TCTCATCTTTATTCCCTGGACTTTT 351 613 75 Antisense
GGACTTTTATCCATGCATGCATACC 466 525 92 Antisense
CACATTCACCACCGCAAACTTCGGT 179 197 177 Antisense
GTGATATGACCCCTATTCAAACACC 592 483 200 Antisense
GATCCACTGAACAATTACTACTCGG 538 415 283 Antisense
ACTACTCGGATTCTAAAGTCCCACG 213 89 299 Antisense
TAAAGTCCCACGAGATGCTGGCGCG 287 639 312 Antisense
TGCTGGCGCGGATAGCGGTACAGGA 323 583 327 Antisense
GGTACAGGATCCATACAGACGGTTC 594 493 343 Antisense
Sequence Source Affymetrix Proprietary Database