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[184465_at]

Description Y62H9A.14 /REP_DB=WormBase Gene ID /WP=CE19250 /TR=Q9XTG2 /GB=CAA21571.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 36      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 59.4
(3)
A 		3.3
(-3)
A 		23.6
(-0.8)
A 		34.1
(0.3)
A 		56
B 47.3
(1.4)
A 		64
(3)
A 		2.6
(-3)
A 		6.5
(-2.6)
A 		61
C 2.7
(-3)
A 		50.4
(2.1)
A 		3.3
(-2.9)
A 		58.5
(3)
A 		56
avr 36.5
(2.4) 		39.2
(3) 		9.8
(-3) 		33
(1.7) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 52.3
(3)
A 		42.7
(1.8)
A 		4.5
(-2.9)
A 		7.8
(-2.5)
A 		6.2
(-2.7)
A 		4
(-3)
A 		48
B 45.1
(3)
A 		13.8
(-1.3)
A 		45
(3)
A 		2.7
(-2.8)
A 		1.3
(-3)
A 		4.3
(-2.6)
A 		44
C 32.3
(3)
A 		24.4
(1.4)
A 		7.6
(-2)
A 		7.5
(-2)
A 		3.1
(-2.9)
A 		2.4
(-3)
A 		30
avr 43.2
(3) 		27
(0.6) 		19
(-0.7) 		6
(-2.6) 		3.5
(-3) 		3.6
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 21.6
(3)
A 		0.7
(-3)
A 		6.2
(-1.4)
A 		5
(-1.8)
A 		21
B 15.1
(2.7)
A 		15.8
(3)
A 		0.6
(-3)
A 		1.4
(-2.7)
A 		15
C 0.9
(-3)
A 		14.5
(3)
A 		1.1
(-2.9)
A 		9.9
(1)
A 		14
avr 12.5
(3) 		10.3
(1.7) 		2.6
(-3) 		5.4
(-1.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 9.6
(0.6)
A 		15.2
(3)
A 		1
(-3)
A 		2
(-2.6)
A 		1.9
(-2.6)
A 		1
(-3)
A 		14
B 15.7
(3)
A 		4.6
(-1.4)
A 		10.9
(1.1)
A 		0.7
(-2.9)
A 		0.5
(-3)
A 		1.6
(-2.6)
A 		15
C 12
(3)
A 		7.4
(0.5)
A 		1.9
(-2.4)
A 		1.5
(-2.6)
A 		1
(-2.9)
A 		0.8
(-3)
A 		11
avr 12.4
(3) 		9.1
(1.2) 		4.6
(-1.1) 		1.4
(-2.8) 		1.1
(-3) 		1.1
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184465_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16136
Sequence Type Exemplar sequence
Representative Public ID Y62H9A.14 NCBI
Target Description Y62H9A.14 /REP_DB=WormBase Gene ID /WP=CE19250 /TR=Q9XTG2 /GB=CAA21571.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077594(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077594 NCBI Caenorhabditis elegans Y62H9A.14 (Y62H9A.14) mRNA, complete cds. 11/11 None
Y62H9A.14 ENSEMBL cdna:known chromosome:CEL140:X:11921173:11922779:1 gene:Y62H9A.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11921172-11922779(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y62H9A.14
Entrez Gene 190469 Entrez gene
SwissProt Q9XTG2 EMBL-EBI
WormBase CE35695 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90613 Hypothetical protein Y62H9A.14 [Caenorhabditis elegans] emb|CAA21571.2| Hypothetical protein Y62H9A.14 [Caenorhabditis elegans] ref|NP_509995.2| Y62H9A.14 [Caenorhabditis elegans] 1.0E-155
Sequence
Target Sequence 
>C. ELEGANS:184465_AT
tcaaaccgagcgcgggttcattcctaatagtttcagttttcctcttcgtgattcagcttg
gagtgcactttctgcaaaagctctagaagaagactggagtcatctttgtgaaattccaat
agcagggtctgaagagtatggattcaaggaactggtcagaatttatcctgaaaagttcga
ttggagcatgattgggacattcttaaccgaatattgtagagcgtccatttggagtttgta
ttgcaatccaaaaacaggcgctgagttttcaactggaccagttttcaaggatgtgcacat
tgaggttaccatgtttgacaatcttctcccgttaaacaagcatcatgcttcctcgaagga
aaactatgaaaagaacccatcgttatatcaatatgacctgctgtccacaggactagacaa
aaagaaccttcgcaaaccatgtgacagctttgaagatcccaccaataaatatgctcaaat
atttccatccttgagtcttacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAACCGAGCGCGGGTTCATTCCT 673 627 138 Antisense
TAATAGTTTCAGTTTTCCTCTTCGT 445 633 162 Antisense
TTCCTCTTCGTGATTCAGCTTGGAG 568 699 176 Antisense
GGCGCTGAGTTTTCAACTGGACCAG 260 543 394 Antisense
TACCATGTTTGACAATCTTCTCCCG 706 649 444 Antisense
ATCTTCTCCCGTTAAACAAGCATCA 532 31 458 Antisense
CAAGCATCATGCTTCCTCGAAGGAA 473 185 474 Antisense
TATGACCTGCTGTCCACAGGACTAG 343 657 529 Antisense
GAACCTTCGCAAACCATGTGACAGC 21 347 561 Antisense
GTGACAGCTTTGAAGATCCCACCAA 251 483 578 Antisense
AATATTTCCATCCTTGAGTCTTACC 359 173 615 Antisense
Sequence Source Affymetrix Proprietary Database