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[184464_s_at]

Description C43E11.7 /REP_DB=WormBase Gene ID /WP=CE08685 /TR=P91148 /GB=AAB37622.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 03      6grp_cgc > 54      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 617
1 2 3 4 range
A 30.5
(-2.7)
A 		22.8
(-2.8)
A 		3.7
(-3)
A 		497.8
(3)
P 		494
B 91.6
(0.4)
M 		5.6
(-3)
A 		11.8
(-2.8)
A 		156.7
(3)
M 		151
C 54.4
(-2.5)
A 		1.9
(-3)
A 		4.1
(-3)
A 		619.1
(3)
P 		617
avr 58.8
(-2.2) 		10.1
(-2.9) 		6.5
(-3) 		424.5
(3) 		418

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 7.6
(-2.7)
A 		19.4
(-2)
A 		102
(3)
P 		2.4
(-3)
A 		63.7
(0.7)
A 		5.4
(-2.8)
A 		100
B 24.6
(-0.6)
A 		53.6
(3)
P 		43.7
(1.8)
A 		6.6
(-2.8)
A 		27.3
(-0.2)
A 		4.6
(-3)
A 		49
C 1.8
(-3)
A 		135.6
(3)
P 		3.6
(-2.9)
A 		7.3
(-2.8)
A 		4.9
(-2.9)
A 		4.6
(-2.9)
A 		134
avr 11.3
(-2.4) 		69.5
(3) 		49.8
(1.2) 		5.4
(-3) 		32
(-0.5) 		4.9
(-3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 11.1
(-2.2)
A 		5
(-2.7)
A 		1
(-3)
A 		72.9
(3)
P 		72
B 29.2
(2.2)
M 		1.4
(-3)
A 		2.7
(-2.8)
A 		33.4
(3)
M 		32
C 18
(-2)
A 		0.5
(-3)
A 		1.4
(-2.9)
A 		104.4
(3)
P 		104
avr 19.4
(-1.4) 		2.3
(-2.9) 		1.7
(-3) 		70.2
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 1.4
(-2.8)
A 		6.9
(-1.3)
A 		22.2
(3)
P 		0.6
(-3)
A 		19.2
(2.2)
A 		1.3
(-2.8)
A 		22
B 8.6
(-0.4)
A 		17.8
(3)
P 		10.6
(0.3)
A 		1.8
(-3)
A 		11.1
(0.5)
A 		1.7
(-3)
A 		16
C 0.7
(-3)
A 		41.4
(3)
P 		0.9
(-3)
A 		1.5
(-2.9)
A 		1.6
(-2.9)
A 		1.5
(-2.9)
A 		41
avr 3.6
(-2.3) 		22
(3) 		11.2
(-0.1) 		1.3
(-3) 		10.6
(-0.3) 		1.5
(-2.9) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184464_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2121
Sequence Type Exemplar sequence
Representative Public ID C43E11.7 NCBI
Target Description C43E11.7 /REP_DB=WormBase Gene ID /WP=CE08685 /TR=P91148 /GB=AAB37622.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058935
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C43E11.7 ENSEMBL cdna:known chromosome:CEL140:I:4239090:4242728:-1 gene:C43E11.7 None
NM_058935 NCBI Caenorhabditis elegans NuDiX family member (ndx-7) (ndx-7) mRNA, complete cds. None
SNAP00000031011 ENSEMBL cdna:SNAP chromosome:CEL140:I:4239173:4242073:-1 None
GENEFINDER00000031032 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4239173:4242727:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000004705 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4239172-4242727(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ndx-7
Ensembl C43E11.7
Entrez Gene 183413 Entrez gene
SwissProt P91148 EMBL-EBI
WormBase CE30504 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37622 Nudix family protein 7 [Caenorhabditis elegans] ref|NP_491336.2| NuDiX family member (ndx-7) [Caenorhabditis elegans] sp|P91148|NDX7_CAEEL Putative nudix hydrolase 1.0E-174
blast AAB37622 Nudix family protein 7 [Caenorhabditis elegans] ref|NP_491336.2| NuDiX family member (ndx-7) [Caenorhabditis elegans] sp|P91148|NDX7_CAEEL Putative nudix hydrolase 1.0E-158
blast CAE66812 Hypothetical protein CBG12176 [Caenorhabditis briggsae] 1.0E-134
blast CAE66812 Hypothetical protein CBG12176 [Caenorhabditis briggsae] 1.0E-120
blast XP_874531 PREDICTED: similar to TESTOSTERONE-REGULATED RP2 PROTEIN (ANDROGEN REGULATED PROTEIN RP2) [Bos taurus] 7.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 4.7E-15
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 1.0E-8
Sequence
Target Sequence 
>C. ELEGANS:184464_S_AT
ggcctctctcaatttcatttatttcaaaattcctctttttctctcacactctctcacgat
cactagaggtcccaaaaaaaatccatttttcgagatttatcagcgaatcgccggctttaa
acagttttgtctggaaaatcactgattttgaactttcacatgtgggcgtattcataggtg
atttacaattttgccctttttttcatataatttatatgtgtttgatcaggcatacaaatt
cggctcaaaaagctcactctctcgcccatgagagacgcagagacagttcatcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCTCTCTCAATTTCATTTATTTC 476 543 737 Antisense
TATTTCAAAATTCCTCTTTTTCTCT 495 661 756 Antisense
TCACACTCTCTCACGATCACTAGAG 119 629 780 Antisense
TCACGATCACTAGAGGTCCCAAAAA 378 621 790 Antisense
ATCCATTTTTCGAGATTTATCAGCG 10 41 817 Antisense
GATTTATCAGCGAATCGCCGGCTTT 708 427 830 Antisense
GAATCGCCGGCTTTAAACAGTTTTG 537 323 841 Antisense
GAACTTTCACATGTGGGCGTATTCA 10 351 886 Antisense
TCGGCTCAAAAAGCTCACTCTCTCG 576 607 976 Antisense
CACTCTCTCGCCCATGAGAGACGCA 493 197 991 Antisense
GAGAGACGCAGAGACAGTTCATCAC 123 395 1006 Antisense
Sequence Source Affymetrix Proprietary Database