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[184463_at]

Description C43E11.7 /REP_DB=WormBase Gene ID /WP=CE08685 /TR=P91148 /GB=AAB37622.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 74      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 78      6grp_total > 74      4grp_total > 59      6grp_cgc > 66      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 800
1 2 3 4 range
A 1217.4
(0.6)
P 		1453.8
(2.4)
P 		1535.2
(3)
P 		754
(-3)
P 		781
B 1306.8
(0.7)
P 		1237.8
(0)
P 		1553.9
(3)
P 		915.9
(-3)
P 		638
C 1213.1
(0.5)
P 		1301.9
(1.2)
P 		1514.7
(3)
P 		785.2
(-3)
P 		730
avr 1245.8
(0.6) 		1331.2
(1.3) 		1534.6
(3) 		818.4
(-3) 		716

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 704
1 2 3 4 5 6 range
A 1506.5
(-1.3)
P 		1390.5
(-3)
P 		1555.7
(-0.6)
P 		1605.9
(0.1)
P 		1605
(0.1)
P 		1805.8
(3)
P 		415
B 1435.3
(-0.9)
P 		1232.8
(-3)
P 		1784.5
(2.6)
P 		1621.4
(1)
P 		1556.4
(0.3)
P 		1819.2
(3)
P 		586
C 1204.2
(-3)
P 		1260.7
(-2.5)
P 		1908.3
(3)
P 		1681.9
(1.1)
P 		1409.6
(-1.2)
P 		1861
(2.6)
P 		704
avr 1382
(-2) 		1294.7
(-3) 		1749.5
(2.1) 		1636.4
(0.8) 		1523.7
(-0.4) 		1828.7
(3) 		534
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 418
1 2 3 4 range
A 443.3
(3)
P 		315.6
(0.7)
P 		401.3
(2.2)
P 		110.4
(-3)
P 		333
B 416.7
(3)
P 		305.7
(-0)
P 		360.1
(1.5)
P 		195.2
(-3)
P 		222
C 401.6
(1.1)
P 		374.3
(0.7)
P 		527.9
(3)
P 		132.4
(-3)
P 		396
avr 420.5
(2.8) 		331.9
(0.9) 		429.8
(3) 		146
(-3) 		284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 401
1 2 3 4 5 6 range
A 277.7
(-3)
P 		494.5
(3)
P 		338.8
(-1.3)
P 		407.3
(0.6)
P 		484.3
(2.7)
P 		439.6
(1.5)
P 		217
B 499.4
(-1)
P 		410.4
(-3)
P 		433.3
(-2.5)
P 		429.5
(-2.6)
P 		632.3
(2)
P 		678.4
(3)
P 		268
C 446.3
(-0.7)
P 		384.7
(-2)
P 		485.7
(0.1)
P 		338.2
(-3)
P 		456.1
(-0.5)
P 		623
(3)
P 		285
avr 407.8
(-2.5) 		429.9
(-1.8) 		419.3
(-2.1) 		391.7
(-3) 		524.2
(1.2) 		580.3
(3) 		189
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184463_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2121
Sequence Type Exemplar sequence
Representative Public ID C43E11.7 NCBI
Target Description C43E11.7 /REP_DB=WormBase Gene ID /WP=CE08685 /TR=P91148 /GB=AAB37622.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058935(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058935 NCBI Caenorhabditis elegans NuDiX family member (ndx-7) (ndx-7) mRNA, complete cds. 10/11 None
SNAP00000031011 ENSEMBL cdna:SNAP chromosome:CEL140:I:4239173:4242073:-1 10/11 None
GENEFINDER00000031032 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4239173:4242727:-1 10/11 None
C43E11.7 ENSEMBL cdna:known chromosome:CEL140:I:4239090:4242728:-1 gene:C43E11.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4239172-4242727(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ndx-7
Ensembl C43E11.7
Entrez Gene 183413 Entrez gene
SwissProt P91148 EMBL-EBI
WormBase CE30504 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37622 Nudix family protein 7 [Caenorhabditis elegans] ref|NP_491336.2| NuDiX family member (ndx-7) [Caenorhabditis elegans] sp|P91148|NDX7_CAEEL Putative nudix hydrolase 1.0E-174
blast AAB37622 Nudix family protein 7 [Caenorhabditis elegans] ref|NP_491336.2| NuDiX family member (ndx-7) [Caenorhabditis elegans] sp|P91148|NDX7_CAEEL Putative nudix hydrolase 1.0E-158
blast CAE66812 Hypothetical protein CBG12176 [Caenorhabditis briggsae] 1.0E-134
blast CAE66812 Hypothetical protein CBG12176 [Caenorhabditis briggsae] 1.0E-120
blast XP_874531 PREDICTED: similar to TESTOSTERONE-REGULATED RP2 PROTEIN (ANDROGEN REGULATED PROTEIN RP2) [Bos taurus] 7.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 4.7E-15
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 1.0E-8
Sequence
Target Sequence 
>C. ELEGANS:184463_AT
gaaaaagccaatttgtccgcagccaatcaagacaataggagagaacttgatcacaaattg
ctttccaggagattatatgtatattggtaagttaaagcaaaaaatattctcaccatcacg
gcctctctcaatttcatttatttcaaaattcctctttttctctcacactctctcacgatc
actagaggtcccaaaaaaaatccatttttcgagatttatcagcgaatcgccggctttaaa
cagttttgtctggaaaatcactgattttgaactttcacatgtgggcgtattcataggtga
tttacaattttgccctttttttcatataatttatatgtgtttgatcaggcatacaaattc
ggctcaaaaagctcactctctcgcccatgagagacgcagagacagttcatcacatgaaaa
cagcttgcaacaaccgctccgtcaaatgtctgctgatcgtgttaccgttgatccaactca
accaactcatcgcgccacctactattcggagccaatgtatggaaaagttcggttgtacca
gcacctactgaaaccagcggatattgcagccttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAAGCCAATTTGTCCGCAGCCA 218 355 618 Antisense
GTCCGCAGCCAATCAAGACAATAGG 432 475 632 Antisense
GAGAACTTGATCACAAATTGCTTTC 624 391 658 Antisense
TACAATTTTGCCCTTTTTTTCATAT 694 641 920 Antisense
GAAAACAGCTTGCAACAACCGCTCC 164 355 1033 Antisense
AAATGTCTGCTGATCGTGTTACCGT 617 119 1061 Antisense
GATCGTGTTACCGTTGATCCAACTC 166 417 1072 Antisense
CCACCTACTATTCGGAGCCAATGTA 466 271 1112 Antisense
GAAAAGTTCGGTTGTACCAGCACCT 358 287 1139 Antisense
TACCAGCACCTACTGAAACCAGCGG 236 649 1153 Antisense
AAACCAGCGGATATTGCAGCCTTCC 307 125 1168 Antisense
Sequence Source Affymetrix Proprietary Database