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[184462_at]

Description F46F11.7 /REP_DB=WormBase Gene ID /WP=CE10608 /TR=P91307 /GB=AAK21384.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 72      6grp_highest_nonorm > 63      6grp_total > 73      4grp_total > 48      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 635
1 2 3 4 range
A 73
(-3)
A 		538
(1.6)
P 		676.6
(3)
P 		136.7
(-2.4)
A 		604
B 42
(-3)
A 		502.4
(2.4)
P 		555.3
(3)
P 		151.3
(-1.7)
P 		513
C 59.7
(-3)
A 		468.5
(1)
P 		669.3
(3)
P 		189.7
(-1.7)
P 		610
avr 58.2
(-3) 		503
(1.6) 		633.7
(3) 		159.2
(-1.9) 		576

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 537
1 2 3 4 5 6 range
A 291.5
(-3)
P 		322.3
(-2.7)
P 		744
(2.1)
P 		828.3
(3)
P 		463.7
(-1.1)
P 		416.7
(-1.6)
P 		537
B 360.9
(-3)
P 		389.9
(-2.5)
P 		649.7
(1.6)
P 		737.9
(3)
P 		603.2
(0.9)
P 		472.2
(-1.2)
P 		377
C 297.3
(-3)
P 		423.5
(-1.5)
P 		582.2
(0.3)
P 		816.7
(3)
P 		525.1
(-0.4)
P 		503
(-0.6)
P 		519
avr 316.6
(-3) 		378.6
(-2.2) 		658.6
(1.3) 		794.3
(3) 		530.7
(-0.3) 		464
(-1.1) 		478
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 26.6
(-2.7)
A 		116.8
(0.7)
P 		176.9
(3)
P 		20
(-3)
A 		157
B 13.4
(-3)
A 		124.1
(2.8)
P 		128.7
(3)
P 		32.2
(-2)
P 		115
C 19.8
(-3)
A 		134.7
(0.2)
P 		233.3
(3)
P 		32
(-2.7)
P 		214
avr 19.9
(-3) 		125.2
(1) 		179.6
(3) 		28.1
(-2.7) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 53.7
(-3)
P 		114.6
(-0.7)
P 		162
(1.2)
P 		210.1
(3)
P 		139.9
(0.3)
P 		101.5
(-1.2)
P 		156
B 125.6
(-3)
P 		129.8
(-2.8)
P 		157.8
(-1.4)
P 		195.5
(0.5)
P 		245.1
(3)
P 		176.1
(-0.5)
P 		120
C 110.2
(-3)
P 		129.2
(-1.1)
P 		148.2
(0.8)
P 		164.2
(2.4)
P 		169.9
(3)
P 		168.4
(2.8)
P 		60
avr 96.5
(-3) 		124.5
(-1.2) 		156
(0.8) 		189.9
(3) 		185
(2.7) 		148.7
(0.4) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184462_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.774
Sequence Type Exemplar sequence
Representative Public ID F46F11.7 NCBI
Target Description F46F11.7 /REP_DB=WormBase Gene ID /WP=CE10608 /TR=P91307 /GB=AAK21384.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059245(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059245 NCBI Caenorhabditis elegans F46F11.7 (F46F11.7) mRNA, complete cds. 11/11 None
GENEFINDER00000023465 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5620791:5622924:1 11/11 None
SNAP00000023450 ENSEMBL cdna:SNAP chromosome:CEL140:I:5620924:5622924:1 11/11 None
F46F11.7 ENSEMBL cdna:known chromosome:CEL140:I:5621087:5622924:1 gene:F46F11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5621086-5622924(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46F11.7
Entrez Gene 185873 Entrez gene
WormBase CE39101 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21384 Hypothetical protein F46F11.7 [Caenorhabditis elegans] 1.0E-170
blast AAK21384 Hypothetical protein F46F11.7 [Caenorhabditis elegans] 1.0E-135
blast NP_491646 F46F11.7 [Caenorhabditis elegans] 1.0E-128
blast AAK21384 Hypothetical protein F46F11.7 [Caenorhabditis elegans] 1.0E-128
blast CAE68921 Hypothetical protein CBG14900 [Caenorhabditis briggsae] 1.0E-103
blast CAE68921 Hypothetical protein CBG14900 [Caenorhabditis briggsae] 7.0E-71
Sequence
Target Sequence 
>C. ELEGANS:184462_AT
gagactttctgtattggtcacgcggattgtggtccaaatatgttgtgtcagcaaaataaa
tgtcaactcaaacctcaagagccattatgtaactgtcagccacatgaaatttgtcatcac
ggacaatgttatccgaatacccagtgcacatcaatttactgtgaaccgggaacctattgt
gtagagggtcaatgtttgagtgccgtcggtaaaacgtgccaagatgatacgtgtcatggt
ggtactgtatgcgtcaatagcgtctgcgtgatgaatccatgcccgggaagatgtccacat
gatcaggattgtcgtctcggagagtgtagaataatggaaggaattccatgtattggagaa
tgcaagcatccatttgtttgcatagatggacgttgcagacgaaacgattgcgctcggaaa
gtatgccaacttggtgaatcctgtgaaggtggtaactgtgctcgagttgctggtcgtttt
tgtactttggcgattcgagactgcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACTTTCTGTATTGGTCACGCGG 628 393 208 Antisense
TGGTCACGCGGATTGTGGTCCAAAT 340 551 222 Antisense
GAGCCATTATGTAACTGTCAGCCAC 393 385 286 Antisense
TTATCCGAATACCCAGTGCACATCA 153 679 336 Antisense
GTCAATGTTTGAGTGCCGTCGGTAA 684 463 395 Antisense
ACTGTATGCGTCAATAGCGTCTGCG 699 97 451 Antisense
AGCGTCTGCGTGATGAATCCATGCC 536 81 466 Antisense
GAATCCATGCCCGGGAAGATGTCCA 691 329 480 Antisense
ATGATCAGGATTGTCGTCTCGGAGA 85 47 506 Antisense
TGCTCGAGTTGCTGGTCGTTTTTGT 266 581 666 Antisense
GTACTTTGGCGATTCGAGACTGCGG 682 457 689 Antisense
Sequence Source Affymetrix Proprietary Database