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[184459_at]

Description C50E3.10 /REP_DB=WormBase Gene ID /WP=CE08903 /TR=Q22930 /GB=AAB04885.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 0      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 41.2
(-0.2)
A 		7.7
(-3)
A 		51.2
(0.6)
A 		80.2
(3)
A 		73
B 26.1
(0.1)
A 		22.8
(-0.5)
A 		8.7
(-3)
A 		42.5
(3)
A 		34
C 22.8
(0.3)
A 		31.6
(2.5)
A 		33.8
(3)
A 		9.4
(-3)
A 		24
avr 30
(-0.6) 		20.7
(-3) 		31.2
(-0.3) 		44
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 2.4
(-3)
A 		4.2
(-2.9)
A 		42.1
(-0.4)
A 		71.6
(1.6)
A 		93.3
(3)
A 		4.3
(-2.9)
A 		91
B 42.9
(0.1)
A 		70.4
(2.6)
A 		7.6
(-3)
A 		74.9
(3)
A 		63.5
(2)
A 		28.2
(-1.2)
A 		67
C 48.4
(0.4)
A 		13.5
(-3)
A 		47
(0.2)
A 		76
(3)
A 		70.2
(2.4)
A 		48.3
(0.3)
A 		63
avr 31.2
(-2.5) 		29.4
(-2.7) 		32.2
(-2.3) 		74.2
(2.8) 		75.7
(3) 		26.9
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 15
(3)
A 		1.7
(-3)
A 		13.4
(2.3)
A 		11.7
(1.5)
A 		13
B 8.3
(2.3)
A 		5.6
(0)
A 		2
(-3)
A 		9.1
(3)
A 		7
C 7.6
(0.5)
A 		9.1
(1.4)
A 		11.8
(3)
A 		1.6
(-3)
A 		10
avr 10.3
(3) 		5.5
(-3) 		9.1
(1.5) 		7.5
(-0.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.5
(-2.8)
A 		9.2
(-1.1)
A 		18.2
(0.8)
A 		28.2
(3)
A 		1.1
(-2.8)
A 		28
B 14.9
(0.3)
A 		23.4
(2.4)
A 		1.9
(-3)
A 		19.8
(1.5)
A 		25.8
(3)
A 		10.5
(-0.8)
A 		24
C 17.9
(1.5)
A 		4.1
(-3)
A 		12
(-0.5)
A 		15.3
(0.6)
A 		22.7
(3)
A 		16.2
(0.9)
A 		19
avr 11.1
(-1.9) 		9.7
(-2.3) 		7.7
(-3) 		17.8
(0.4) 		25.6
(3) 		9.3
(-2.5) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184459_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11926
Sequence Type Exemplar sequence
Representative Public ID C50E3.10 NCBI
Target Description C50E3.10 /REP_DB=WormBase Gene ID /WP=CE08903 /TR=Q22930 /GB=AAB04885.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072562(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072562 NCBI Caenorhabditis elegans C50E3.10 (C50E3.10) mRNA, complete cds. 11/11 None
SNAP00000028535 ENSEMBL cdna:SNAP chromosome:CEL140:V:7603529:7604135:-1 9/11 None
GENEFINDER00000028555 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7601586:7604135:-1 11/11 None
C50E3.10 ENSEMBL cdna:known chromosome:CEL140:V:7603201:7604135:-1 gene:C50E3.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7603201-7604136(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50E3.10
Entrez Gene 183662 Entrez gene
SwissProt Q22930 EMBL-EBI
WormBase CE08903 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504963 C50E3.10 [Caenorhabditis elegans] gb|AAB04885.1| Hypothetical protein C50E3.10 [Caenorhabditis elegans] 1.0E-112
blast NP_504962 C50E3.9 [Caenorhabditis elegans] gb|AAB04884.1| Hypothetical protein C50E3.9 [Caenorhabditis elegans] 1.0E-102
blast NP_504963 C50E3.10 [Caenorhabditis elegans] gb|AAB04885.1| Hypothetical protein C50E3.10 [Caenorhabditis elegans] 2.0E-88
blast CAB07484 Hypothetical protein T19C9.5 [Caenorhabditis elegans] ref|NP_507364.1| T19C9.5 [Caenorhabditis elegans] 3.0E-61
blast CAB07484 Hypothetical protein T19C9.5 [Caenorhabditis elegans] ref|NP_507364.1| T19C9.5 [Caenorhabditis elegans] 1.0E-60
blast CAA16500 Hypothetical protein F08E10.7 [Caenorhabditis elegans] ref|NP_507429.1| F08E10.7 [Caenorhabditis elegans] 2.0E-60
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000028555 6 217-239,254-276,295-317,337-359,380-402,417-439
Sequence
Target Sequence 
>C. ELEGANS:184459_AT
gatccttttgggtcttactgttggctctttcgccagtacccacgagtggaatgaaactgc
gatagaaggacttgtttttgttcacaacaagctaagaaatgatgcctctcaaggcctttg
ggctcgccacaatatctccaaatcgactgacatgcaaaaattgttctggaacaactcatt
agtggctgaggccaaacatgaaatgtacgattgcgatcagctggaaaagagagaattgac
attaggtgaaaatatataccaatacgatgtcaccacttatgatgacgttgatggtcaaca
aggagaggcagctattaataaagattctcacgatgctcttagttctaaagatcaagcagc
tcagtatcgtctccgacaaatactttattccaaatcaaactcaatcggatgtatctacga
aagctgtgataggattgatgatgaagggacaaattataacactcgtttcatcatctgcaa
gtatagtccagcattgaaaaacatcgatgaccagctatacgaagaaggagaagaagcttg
ctccaactgtccatctggtacttcatgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCTTTTGGGTCTTACTGTTGGC 29 417 30 Antisense
TTTCGCCAGTACCCACGAGTGGAAT 623 669 57 Antisense
TGATGCCTCTCAAGGCCTTTGGGCT 376 565 129 Antisense
ATATCTCCAAATCGACTGACATGCA 282 21 161 Antisense
GAAATGTACGATTGCGATCAGCTGG 475 361 229 Antisense
GATTCTCACGATGCTCTTAGTTCTA 647 431 352 Antisense
AGATCAAGCAGCTCAGTATCGTCTC 175 67 378 Antisense
ATCGTCTCCGACAAATACTTTATTC 524 35 395 Antisense
ATAACACTCGTTTCATCATCTGCAA 392 25 485 Antisense
AGAAGAAGCTTGCTCCAACTGTCCA 18 75 558 Antisense
ACTGTCCATCTGGTACTTCATGTAC 404 97 575 Antisense
Sequence Source Affymetrix Proprietary Database