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[184458_s_at]

Description T19B10.4B /REP_DB=WormBase Gene ID /WP=CE16415 /TR=Q22558 /GB=CAA98546.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 57      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 86      6grp_total > 58      4grp_total > 19      6grp_highest_sub > Cu      6grp_cgc > 27      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 880
1 2 3 4 range
A 1036.7
(-1.5)
P 		1046.2
(-1.4)
P 		872.8
(-3)
P 		1526
(3)
P 		653
B 834.5
(-3)
P 		1352.1
(0.5)
P 		909.9
(-2.5)
P 		1714.9
(3)
P 		880
C 1153.9
(-0.8)
P 		1223.8
(-0.1)
P 		953.4
(-3)
P 		1504.9
(3)
P 		552
avr 1008.4
(-2.1) 		1207.4
(-0.4) 		912
(-3) 		1581.9
(3) 		670

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 732
1 2 3 4 5 6 range
A 709.6
(-2.6)
P 		989.9
(1.8)
P 		820.6
(-0.9)
P 		1067.9
(3)
P 		686.5
(-3)
P 		1012.7
(2.1)
P 		381
B 783.3
(-3)
P 		812
(-1.8)
P 		830.4
(-1.1)
P 		802.7
(-2.2)
P 		932.6
(3)
P 		918.5
(2.4)
P 		149
C 1418.6
(3)
P 		833.5
(-3)
P 		1014.5
(-1.1)
P 		894
(-2.4)
P 		945.3
(-1.9)
P 		1108.2
(-0.2)
P 		585
avr 970.5
(1.4) 		878.5
(-2.1) 		888.5
(-1.7) 		921.5
(-0.5) 		854.8
(-3) 		1013.1
(3) 		158
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 377.5
(3)
P 		227.1
(-2.9)
P 		228.2
(-2.8)
P 		223.4
(-3)
P 		154
B 266.1
(-0.9)
P 		333.9
(1.8)
P 		210.9
(-3)
P 		365.4
(3)
P 		155
C 382
(3)
P 		351.9
(1.6)
P 		332.3
(0.7)
P 		253.7
(-3)
P 		128
avr 341.9
(3) 		304.3
(0.3) 		257.1
(-3) 		280.8
(-1.3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 395
1 2 3 4 5 6 range
A 130.8
(-3)
P 		352.1
(3)
P 		178.7
(-1.7)
P 		270.8
(0.8)
P 		207.1
(-0.9)
P 		246.5
(0.1)
P 		221
B 272.5
(-0.6)
P 		270.3
(-0.7)
P 		201.6
(-3)
P 		212.6
(-2.6)
P 		378.9
(3)
P 		342.5
(1.8)
P 		177
C 525.8
(3)
P 		254.3
(-1.7)
P 		258.2
(-1.6)
P 		179.8
(-3)
P 		305.9
(-0.8)
P 		371
(0.3)
P 		346
avr 309.7
(2.4) 		292.2
(1.4) 		212.8
(-3) 		221.1
(-2.5) 		297.3
(1.7) 		320
(3) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184458_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12945
Sequence Type Exemplar sequence
Representative Public ID T19B10.4B NCBI
Target Description T19B10.4B /REP_DB=WormBase Gene ID /WP=CE16415 /TR=Q22558 /GB=CAA98546.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073449(11), NM_073450(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073449 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-70) (pqn-70) mRNA, complete cds. 11/11 A 
NM_073450 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-70) (pqn-70) mRNA, complete cds. 11/11 None
SNAP00000024745 ENSEMBL cdna:SNAP chromosome:CEL140:V:11230745:11231278:-1 10/11 None
GENEFINDER00000024758 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11225564:11231278:-1 11/11 None
T19B10.4a ENSEMBL cdna:known chromosome:CEL140:V:11228953:11231289:-1 gene:T19B10.4 11/11 A 
T19B10.4b ENSEMBL cdna:known chromosome:CEL140:V:11228965:11231291:-1 gene:T19B10.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024744 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11229467-11231278(-) 92.86 100.0
Public Domain and Genome References
Ensembl T19B10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98542 Hypothetical protein T19B10.3 [Caenorhabditis elegans] ref|NP_505849.2| T19B10.3 [Caenorhabditis elegans] 0.0
blast CAE75193 Hypothetical protein CBG23139 [Caenorhabditis briggsae] 0.0
blast CAE65789 Hypothetical protein CBG10890 [Caenorhabditis briggsae] 1.0E-139
blast CAA98545 Hypothetical protein T19B10.4a [Caenorhabditis elegans] ref|NP_505850.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-70) [Caenorhabditis elegans] 3.0E-46
blast CAE75194 Hypothetical protein CBG23140 [Caenorhabditis briggsae] 5.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR001944 EMBL-EBI Glycoside hydrolase, family 35 2.0E-109
Sequence
Target Sequence 
>C. ELEGANS:184458_S_AT
atgggttcatctggaatgggagttgatgcgaatggaaagccaatcaagagacagcctaca
actaataataacaacaagaaagctggaaacaacagcaacaaccagaaaaaaggaaataat
caaaacaacaaaaataataagaaccagaatggaggaaatcgcaaccaaaatcgccaacat
caccagcctccaatgatgcaaatggttccacccttcggcccaatgggaccaggaggacca
ggaggaccaggattcatgggcccaccgaatggaaacatgaacttcttcaacggacaaaat
cgtcgtaatggcagtggaaaggatacaatggaccatcggctaacaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGTTCATCTGGAATGGGAGTTG 254 49 13 Antisense
GCCAATCAAGAGACAGCCTACAACT 361 277 51 Antisense
GGAGGAAATCGCAACCAAAATCGCC 600 513 163 Antisense
CGCAACCAAAATCGCCAACATCACC 409 253 172 Antisense
ACATCACCAGCCTCCAATGATGCAA 459 105 189 Antisense
AATGATGCAAATGGTTCCACCCTTC 257 165 204 Antisense
CCCTTCGGCCCAATGGGACCAGGAG 515 259 223 Antisense
GATTCATGGGCCCACCGAATGGAAA 698 429 263 Antisense
AACATGAACTTCTTCAACGGACAAA 138 137 286 Antisense
CAAAATCGTCGTAATGGCAGTGGAA 370 187 307 Antisense
TACAATGGACCATCGGCTAACAATG 598 635 336 Antisense
Sequence Source Affymetrix Proprietary Database