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[184457_at]

Description Y57A10B.3 /REP_DB=WormBase Gene ID /WP=CE20324 /TR=Q9XWH8 /GB=CAA21690.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 62      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 281
1 2 3 4 range
A 286.1
(3)
M 		121.2
(-0.5)
A 		159.8
(0.3)
A 		5.3
(-3)
A 		281
B 150.9
(1.5)
A 		199.4
(3)
A 		159.3
(1.8)
A 		5.5
(-3)
A 		194
C 237.8
(3)
P 		62
(-1.6)
A 		91.1
(-0.9)
A 		10.3
(-3)
A 		228
avr 224.9
(3) 		127.5
(0.3) 		136.7
(0.6) 		7
(-3) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 120.9
(1.1)
A 		66.7
(-1.9)
A 		154.5
(3)
A 		143.1
(2.4)
A 		141
(2.2)
A 		47.1
(-3)
A 		107
B 178.7
(3)
A 		153
(2)
A 		92
(-0.5)
A 		31.3
(-3)
A 		161.3
(2.3)
A 		100.2
(-0.2)
A 		147
C 125
(0.8)
A 		152.1
(2.1)
A 		75.3
(-1.5)
A 		171.3
(3)
A 		103.1
(-0.2)
A 		43.4
(-3)
A 		128
avr 141.5
(3) 		123.9
(1.6) 		107.3
(0.4) 		115.2
(1) 		135.1
(2.5) 		63.6
(-3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 104.2
(3)
M 		26.3
(-1.5)
A 		41.8
(-0.6)
A 		0.8
(-3)
A 		103
B 48.1
(2.9)
A 		49.2
(3)
A 		36.9
(1.5)
A 		1.2
(-3)
A 		48
C 78.7
(3)
P 		17.8
(-1.7)
A 		31.7
(-0.7)
A 		1.7
(-3)
A 		77
avr 77
(3) 		31.1
(-0.6) 		36.8
(-0.2) 		1.2
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 22.3
(-0.9)
A 		23.7
(-0.6)
A 		33.7
(1.3)
A 		36.3
(1.8)
A 		42.5
(3)
A 		11.5
(-3)
A 		31
B 62.2
(2.6)
A 		50.9
(1.5)
A 		22.3
(-1.5)
A 		8.3
(-3)
A 		65.6
(3)
A 		37.4
(0)
A 		57
C 46.3
(3)
A 		46.4
(3)
A 		19.2
(-2.1)
A 		34.5
(0.8)
A 		33.4
(0.6)
A 		14.5
(-3)
A 		32
avr 43.6
(2.2) 		40.3
(1.4) 		25.1
(-2.1) 		26.4
(-1.8) 		47.2
(3) 		21.1
(-3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184457_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2856
Sequence Type Exemplar sequence
Representative Public ID Y57A10B.3 NCBI
Target Description Y57A10B.3 /REP_DB=WormBase Gene ID /WP=CE20324 /TR=Q9XWH8 /GB=CAA21690.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064225(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064225 NCBI Caenorhabditis elegans Y57A10B.3 (Y57A10B.3) mRNA, complete cds. 11/11 None
SNAP00000034314 ENSEMBL cdna:SNAP chromosome:CEL140:II:12383390:12384493:1 11/11 None
GENEFINDER00000034319 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12383381:12384493:1 11/11 None
Y57A10B.3 ENSEMBL cdna:known chromosome:CEL140:II:12383375:12384493:1 gene:Y57A10B.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12383377-12384490(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10B.3
Entrez Gene 174877 Entrez gene
SwissProt Q9XWH8 EMBL-EBI
WormBase CE20324 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21690 Hypothetical protein Y57A10B.3 [Caenorhabditis elegans] ref|NP_496626.1| Y57A10B.3 [Caenorhabditis elegans] 0.0
blast AAN65319 Hypothetical protein F39E9.2 [Caenorhabditis elegans] ref|NP_494499.2| F39E9.2 [Caenorhabditis elegans] 2.0E-41
blast CAB05523 Hypothetical protein F57C2.1 [Caenorhabditis elegans] ref|NP_497016.1| F57C2.1 [Caenorhabditis elegans] 6.0E-41
blast CAB05523 Hypothetical protein F57C2.1 [Caenorhabditis elegans] ref|NP_497016.1| F57C2.1 [Caenorhabditis elegans] 7.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.3E-20
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.3E-20
Sequence
Target Sequence 
>C. ELEGANS:184457_AT
tgatccgggcggcgagatttggtacaatgtgtcacgttcaagatatctttcaacttatta
tgcatcttacaactacacattagagcctcaaaagagacatatggaggcgatggaacttga
taaatatttcgctccggtggacgatcgagatgcagttttgattgttgagggtaaaaagct
gcacgtcagtagttgtttcctctccttccattccacctacttccacgatcttttcgaata
cgacaacagcacaagcctcctgaatattgaaattcctgttgaaggagtttcctatgaaga
cttgggcctcttgctcagcgttgtgcactcgacggcgacttttccaaatgatgggaattc
taagaaacttctggaactagcttctcaattccaaacgccatacgtgttgggtcttgtgga
aaaccatcttcttacaaatacgtttgcttggaatgaaactttaatgttactggccgacaa
gtacgggttgatgaggcttctgggaaagtctatacgacgaattgactctatcgaaaaagc
aaggcaattgaaggattcggttttcttggagctttctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATCCGGGCGGCGAGATTTGGTAC 550 565 339 Antisense
ATATTTCGCTCCGGTGGACGATCGA 312 19 462 Antisense
AGCTGCACGTCAGTAGTTGTTTCCT 488 79 515 Antisense
ACCTACTTCCACGATCTTTTCGAAT 562 85 553 Antisense
AATACGACAACAGCACAAGCCTCCT 256 173 575 Antisense
TATGAAGACTTGGGCCTCTTGCTCA 264 657 631 Antisense
TCGACGGCGACTTTTCCAAATGATG 390 601 667 Antisense
GAACTAGCTTCTCAATTCCAAACGC 622 349 712 Antisense
AACGCCATACGTGTTGGGTCTTGTG 121 143 732 Antisense
GTACGGGTTGATGAGGCTTCTGGGA 456 457 819 Antisense
ATTCGGTTTTCTTGGAGCTTTCTGA 609 9 893 Antisense
Sequence Source Affymetrix Proprietary Database