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[184456_at]

Description H17B01.3 /REP_DB=WormBase Gene ID /WP=CE11594 /TR=O44824 /GB=AAK31538.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 20.4
(-3)
A 		39.4
(3)
A 		23.1
(-2.1)
A 		35.8
(1.9)
A 		19
B 25.4
(-3)
A 		67.9
(3)
M 		42.8
(-0.5)
A 		26.7
(-2.8)
A 		43
C 32.6
(-1.9)
A 		28
(-3)
A 		40.2
(-0.2)
A 		53.8
(3)
A 		26
avr 26.1
(-3) 		45.1
(3) 		35.4
(-0.1) 		38.8
(1) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 6.7
(-3)
A 		7.4
(-3)
A 		135.4
(3)
P 		101.6
(1.4)
P 		36.6
(-1.6)
A 		50.4
(-1)
A 		129
B 19.9
(-3)
A 		22.9
(-2.6)
A 		66.7
(3)
P 		66
(2.9)
M 		23.3
(-2.6)
A 		26.5
(-2.2)
A 		47
C 6.9
(-3)
A 		38.2
(-0.4)
A 		59.9
(1.4)
A 		79.1
(3)
P 		31.7
(-0.9)
A 		31.4
(-1)
A 		72
avr 11.2
(-3) 		22.8
(-2.1) 		87.3
(3) 		82.2
(2.6) 		30.5
(-1.5) 		36.1
(-1) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 7.4
(0.9)
A 		8.6
(3)
A 		6
(-1.6)
A 		5.2
(-3)
A 		3
B 8.1
(-1.7)
A 		16.8
(3)
M 		9.9
(-0.7)
A 		5.7
(-3)
A 		11
C 10.8
(-0.3)
A 		8.1
(-3)
A 		14
(3)
A 		9.1
(-2)
A 		6
avr 8.8
(-0.2) 		11.2
(3) 		10
(1.4) 		6.7
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 1.2
(-3)
A 		2.6
(-2.7)
A 		29.5
(3)
P 		25.8
(2.2)
P 		11
(-0.9)
A 		12.3
(-0.6)
A 		28
B 6.9
(-3)
A 		7.6
(-2.6)
A 		16.2
(2.3)
P 		17.5
(3)
M 		9.5
(-1.5)
A 		9.9
(-1.3)
A 		11
C 2.6
(-3)
A 		11.7
(1.1)
A 		15.3
(2.7)
A 		15.9
(3)
P 		10.2
(0.4)
A 		10.5
(0.6)
A 		13
avr 3.6
(-3) 		7.3
(-1.7) 		20.3
(3) 		19.7
(2.8) 		10.2
(-0.6) 		10.9
(-0.4) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184456_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5697
Sequence Type Exemplar sequence
Representative Public ID H17B01.3 NCBI
Target Description H17B01.3 /REP_DB=WormBase Gene ID /WP=CE11594 /TR=O44824 /GB=AAK31538.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061578(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061578 NCBI Caenorhabditis elegans H17B01.3 (H17B01.3) mRNA, complete cds. 11/11 None
SNAP00000040928 ENSEMBL cdna:SNAP chromosome:CEL140:II:1484130:1484861:-1 9/11 None
GENEFINDER00000040938 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1483196:1485763:-1 10/11 None
H17B01.3 ENSEMBL cdna:known chromosome:CEL140:II:1484130:1485957:-1 gene:H17B01.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040929 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1484128-1485956(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H17B01.3
Entrez Gene 186750 Entrez gene
SwissProt O44824 EMBL-EBI
WormBase CE11594 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16298 lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK31538 Hypothetical protein H17B01.3 [Caenorhabditis elegans] ref|NP_493979.1| H17B01.3 [Caenorhabditis elegans] 1.0E-148
blast AAK31538 Hypothetical protein H17B01.3 [Caenorhabditis elegans] ref|NP_493979.1| H17B01.3 [Caenorhabditis elegans] 1.0E-114
blast AAK31538 Hypothetical protein H17B01.3 [Caenorhabditis elegans] ref|NP_493979.1| H17B01.3 [Caenorhabditis elegans] 2.0E-86
blast AAB71292 Hypothetical protein T13B5.7 [Caenorhabditis elegans] ref|NP_493916.1| T13B5.7 [Caenorhabditis elegans] 1.0E-22
blast AAB71292 Hypothetical protein T13B5.7 [Caenorhabditis elegans] ref|NP_493916.1| T13B5.7 [Caenorhabditis elegans] 3.0E-22
blast AAB71292 Hypothetical protein T13B5.7 [Caenorhabditis elegans] ref|NP_493916.1| T13B5.7 [Caenorhabditis elegans] 5.0E-21
blast AAB71290 Hypothetical protein T13B5.6 [Caenorhabditis elegans] ref|NP_493915.1| T13B5.6 [Caenorhabditis elegans] 4.0E-18
blast AAB71290 Hypothetical protein T13B5.6 [Caenorhabditis elegans] ref|NP_493915.1| T13B5.6 [Caenorhabditis elegans] 5.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR002918 EMBL-EBI Lipase, class 2 6.3E-92
Pfam IPR002918 EMBL-EBI Lipase, class 2 5.0E-72
Pfam IPR002918 EMBL-EBI Lipase, class 2 5.3E-85
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000040938 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:184456_AT
aatttggtacatgcgctggctagagaagatcttcaagaagatggaagttttgggggagga
aatcacacaggaggcactccaacttcaattcagttgcttaaaaaaattcataccgcgcaa
caaaatatacagtggtggtcaaaaagaattgcaagtatgattaatctagtacatcagtat
actggtcgaacggttgatattgttgcatatggagaaggttctgcaatcgcacgaaaagct
gttataggaggcgaatgtgcggatactggtgtcatggttgaaagccagttagcaaaagtt
caaacttatatttcagaagaaggaataaatcaaggaatctactgttcatacagcacaact
cacacctgtcaaaacatggtaactggactcaactgcaactcaaaattcatgaaagatatc
aattccaataatactttgcctaccgacgaagttcaacctattttttattctattcagttt
gggctaggaatagccagaaacgaatgtggttcagatccgtacgaaattcctggtgcacac
caagtctatcgtctactcaagtccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTGGTACATGCGCTGGCTAGAG 152 175 214 Antisense
GAGGCACTCCAACTTCAATTCAGTT 238 405 284 Antisense
GAAGGTTCTGCAATCGCACGAAAAG 401 335 427 Antisense
GGCGAATGTGCGGATACTGGTGTCA 655 541 463 Antisense
GTTCATACAGCACAACTCACACCTG 644 443 557 Antisense
TGGTAACTGGACTCAACTGCAACTC 27 553 590 Antisense
TTCCAATAATACTTTGCCTACCGAC 94 697 636 Antisense
GCCTACCGACGAAGTTCAACCTATT 442 255 651 Antisense
TCAACCTATTTTTTATTCTATTCAG 690 631 666 Antisense
AGATCCGTACGAAATTCCTGGTGCA 345 67 726 Antisense
AAGTCTATCGTCTACTCAAGTCCAT 354 157 755 Antisense
Sequence Source Affymetrix Proprietary Database