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[184455_at]

Description Y49E10.24 /REP_DB=WormBase Gene ID /WP=CE22239 /TR=Q9XTU0 /GB=CAB11557.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 136.7
(-0.1)
P 		75.8
(-2.7)
A 		69.1
(-3)
A 		210.3
(3)
P 		141
B 88
(-1.8)
A 		68.2
(-2.9)
A 		67.1
(-3)
A 		171.2
(3)
P 		104
C 148.5
(3)
A 		115.2
(-0.7)
A 		95
(-3)
A 		125.4
(0.4)
P 		54
avr 124.4
(0.1) 		86.4
(-2.4) 		77.1
(-3) 		169
(3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 150.8
(3)
A 		49.1
(-3)
A 		84.5
(-0.9)
A 		68.5
(-1.9)
A 		113.8
(0.8)
A 		89
(-0.6)
A 		102
B 47.2
(-3)
A 		73.7
(1.4)
A 		66.6
(0.2)
A 		83.3
(3)
P 		78.1
(2.1)
A 		81
(2.6)
A 		36
C 79.5
(-0.2)
A 		40.7
(-3)
A 		123.5
(3)
A 		84.2
(0.2)
A 		95.6
(1)
A 		82.7
(0)
A 		83
avr 92.5
(2.5) 		54.5
(-3) 		91.5
(2.4) 		78.7
(0.5) 		95.8
(3) 		84.2
(1.3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 49.8
(3)
P 		16.5
(-3)
A 		18.1
(-2.7)
A 		30.8
(-0.4)
P 		33
B 28.1
(0.6)
A 		16.9
(-2.6)
A 		15.5
(-3)
A 		36.5
(3)
P 		21
C 49.2
(3)
A 		33.1
(-0.4)
A 		33.1
(-0.4)
A 		21.1
(-3)
P 		28
avr 42.4
(3) 		22.2
(-3) 		22.2
(-3) 		29.5
(-0.8) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 27.8
(0.7)
A 		17.5
(-3)
A 		18.4
(-2.6)
A 		17.4
(-3)
A 		34.3
(3)
A 		21.7
(-1.5)
A 		17
B 16.4
(-2.9)
A 		24.5
(0.2)
A 		16.2
(-3)
A 		22.1
(-0.7)
P 		31.7
(3)
A 		30.2
(2.4)
A 		16
C 29.5
(2.4)
A 		12.4
(-3)
A 		31.4
(3)
A 		16.9
(-1.6)
A 		30.9
(2.8)
A 		27.7
(1.8)
A 		19
avr 24.6
(-0.3) 		18.1
(-3) 		22
(-1.4) 		18.8
(-2.7) 		32.3
(3) 		26.5
(0.5) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184455_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6641
Sequence Type Exemplar sequence
Representative Public ID Y49E10.24 NCBI
Target Description Y49E10.24 /REP_DB=WormBase Gene ID /WP=CE22239 /TR=Q9XTU0 /GB=CAB11557.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067228(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067228 NCBI Caenorhabditis elegans Y49E10.24 (Y49E10.24) mRNA, complete cds. 11/11 None
SNAP00000016095 ENSEMBL cdna:SNAP chromosome:CEL140:III:12484669:12488137:1 10/11 None
GENEFINDER00000016118 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12484669:12488137:1 11/11 None
Y49E10.24 ENSEMBL cdna:known chromosome:CEL140:III:12484669:12488137:1 gene:Y49E10.24 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12484664-12488133(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y49E10.24
Entrez Gene 190071 Entrez gene
SwissProt Q9XTU0 EMBL-EBI
WormBase CE22239 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB11557 Hypothetical protein Y49E10.24 [Caenorhabditis elegans] ref|NP_499629.1| Y49E10.24 [Caenorhabditis elegans] 0.0
blast CAE66478 Hypothetical protein CBG11757 [Caenorhabditis briggsae] 0.0
blast CAE66478 Hypothetical protein CBG11757 [Caenorhabditis briggsae] 1.0E-176
blast AAF99937 Hypothetical protein F35F10.12 [Caenorhabditis elegans] ref|NP_503917.1| F35F10.12 [Caenorhabditis elegans] 1.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR000698 EMBL-EBI Arrestin 3.7E-27
Pfam IPR000698 EMBL-EBI Arrestin 5.6E-36
Pfam IPR000698 EMBL-EBI Arrestin 3.1E-44
Sequence
Target Sequence 
>C. ELEGANS:184455_AT
aaacattgacaacatgtcctcccgtccaattttaaagacggaatgttacctgattcaaca
gtgcagatttcttgcatatcgctatggaatttctggtccaacagatggccgacgggcttc
atcactttcagaaaatgatcgatatttgtcgcgaaaaagagatgagattaagattgtttc
agtaatccacgagatgcacatagagccccgtacggagcacaaagcaaaaatgcgtctgaa
aatcccttgtacttgtccaacattcgacagtactcttatccacgtggagtattttgttgt
agtcaagctgcatgtaaagtgtcgaatgaggaatactgtaaaagctgaatgcccgattat
tattggttcaaaaccgctggcagatgagcatgtggatccacgcactcctacctatcagga
ggttgccacgttttcggcgttaacgcacagaagtatgatgtcggtggatgagaagctcac
cccaaaatacgtctattacccgaaatatggaaaatcaagggatgatgaagctgacgagcc
gccgagtttaacagatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACATTGACAACATGTCCTCCCGT 28 129 573 Antisense
GTCCAACAGATGGCCGACGGGCTTC 381 473 668 Antisense
TCCACGAGATGCACATAGAGCCCCG 437 589 758 Antisense
TAGAGCCCCGTACGGAGCACAAAGC 634 651 773 Antisense
AATGCGTCTGAAAATCCCTTGTACT 592 165 801 Antisense
AATCCCTTGTACTTGTCCAACATTC 668 145 813 Antisense
ACATTCGACAGTACTCTTATCCACG 491 105 832 Antisense
CACGCACTCCTACCTATCAGGAGGT 543 199 971 Antisense
TCAGGAGGTTGCCACGTTTTCGGCG 228 619 987 Antisense
GCTCACCCCAAAATACGTCTATTAC 370 297 1047 Antisense
GACGAGCCGCCGAGTTTAACAGATC 234 375 1105 Antisense
Sequence Source Affymetrix Proprietary Database