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[184453_at]

Description W06B11.3 /REP_DB=WormBase Gene ID /WP=CE05045 /TR=Q23190 /GB=AAA81076.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 83      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 64      6grp_total > 74      4grp_total > 24      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 405
1 2 3 4 range
A 512.9
(-3)
P 		563
(-0.3)
P 		623.2
(3)
P 		578.7
(0.6)
P 		110
B 494.7
(-3)
P 		509.9
(-2.8)
P 		739.4
(0.6)
P 		899.7
(3)
P 		405
C 495.5
(-3)
P 		522.4
(-2.5)
P 		688.3
(0.6)
P 		817.7
(3)
P 		322
avr 501
(-3) 		531.8
(-2.3) 		683.6
(1.1) 		765.4
(3) 		264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 701
1 2 3 4 5 6 range
A 423.2
(-3)
P 		668.3
(-0.9)
P 		992.2
(1.9)
P 		1124.6
(3)
P 		792.4
(0.2)
P 		914.8
(1.2)
P 		701
B 554.8
(-3)
P 		679.4
(-1.1)
P 		874.3
(1.7)
P 		958.4
(3)
P 		779.5
(0.3)
P 		916.3
(2.4)
P 		404
C 521.5
(-3)
P 		592.6
(-2.1)
P 		1011.9
(3)
P 		997
(2.8)
P 		852.6
(1.1)
P 		1005.2
(2.9)
P 		490
avr 499.8
(-3) 		646.8
(-1.3) 		959.5
(2.2) 		1026.7
(3) 		808.2
(0.5) 		945.4
(2.1) 		527
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 186.7
(3)
P 		122.2
(-0.8)
P 		162.9
(1.6)
P 		84.7
(-3)
P 		102
B 157.8
(-0.1)
P 		125.9
(-3)
P 		171.3
(1.1)
P 		191.7
(3)
P 		66
C 164
(-1.5)
P 		150.2
(-2.3)
P 		239.9
(3)
P 		137.9
(-3)
P 		102
avr 169.5
(0.8) 		132.8
(-3) 		191.4
(3) 		138.1
(-2.5) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 264
1 2 3 4 5 6 range
A 78
(-3)
P 		237.7
(1.6)
P 		216.1
(1)
P 		285.2
(3)
P 		239.1
(1.7)
P 		222.7
(1.2)
P 		207
B 193
(-3)
P 		226.1
(-1.7)
P 		212.3
(-2.2)
P 		253.8
(-0.5)
P 		316.7
(2)
P 		341.7
(3)
P 		149
C 193.3
(-2.5)
P 		180.8
(-3)
P 		257.5
(-0)
P 		200.5
(-2.2)
P 		275.9
(0.7)
P 		336.5
(3)
P 		156
avr 154.8
(-3) 		214.9
(-0.5) 		228.6
(0) 		246.5
(0.8) 		277.2
(2) 		300.3
(3) 		146
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184453_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16498
Sequence Type Exemplar sequence
Representative Public ID W06B11.3 NCBI
Target Description W06B11.3 /REP_DB=WormBase Gene ID /WP=CE05045 /TR=Q23190 /GB=AAA81076.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076578(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076578 NCBI Caenorhabditis elegans W06B11.3 (W06B11.3) mRNA, complete cds. 9/11 None
W06B11.3 ENSEMBL cdna:known chromosome:CEL140:X:5838065:5839702:-1 gene:W06B11.3 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035429 5/11 Cross Hyb Matching Probes None
GENEFINDER00000035433 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5838099-5839635(-) 96.74 100.0
Public Domain and Genome References
Gene Title
Ensembl W06B11.3
Entrez Gene 189237 Entrez gene
SwissProt Q23190 EMBL-EBI
WormBase CE31254 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81076 Hypothetical protein W06B11.3 [Caenorhabditis elegans] ref|NP_508979.2| W06B11.3 [Caenorhabditis elegans] 1.0E-121
blast CAE68809 Hypothetical protein CBG14761 [Caenorhabditis briggsae] 2.0E-79
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508979.2 4 29-51,61-83,88-110,147-169
W06B11.3 4 29-51,61-83,88-110,147-169
Sequence
Target Sequence 
>C. ELEGANS:184453_AT
aatttcggtttggcagcttgtatcgatcatttgtatgatacttgcattcatcacggaaaa
agaagatttattgattccatatatactttttatggtacggatcaggagtcaggcggatct
gggcgacacttattttttgcaattaaaaaaaaatatcgagaatgtgctcaacaatggcct
gatatttgtggtaacgagcttttccttttgggcaatgcaaattctggtgatcgcagtgtt
tccctactcagaaagagcccaacaccttttgggattccgcgatgagatgggttttgttat
gagagagaaaattacactaacagttctatctgttttcactacaatcacaacaatcactgg
atggtttcttcatgtgggactttcctgctatgtttatttccagagcaggaatcgtgaact
gaaagtcaaaaattctgccagagtagatagaccaccgatggttgcaccattggcaccgga
agctcaaccgaaaactcgtaatgataatttccccaacccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTCGGTTTGGCAGCTTGTATCG 593 173 207 Antisense
TGGTACGGATCAGGAGTCAGGCGGA 293 545 299 Antisense
GGATCTGGGCGACACTTATTTTTTG 409 511 321 Antisense
ACGAGCTTTTCCTTTTGGGCAATGC 586 83 400 Antisense
ATTCTGGTGATCGCAGTGTTTCCCT 542 9 427 Antisense
GTGTTTCCCTACTCAGAAAGAGCCC 505 483 442 Antisense
CAACACCTTTTGGGATTCCGCGATG 572 187 466 Antisense
AGTTCTATCTGTTTTCACTACAATC 116 65 528 Antisense
GGTTTCTTCATGTGGGACTTTCCTG 260 505 569 Antisense
GACTTTCCTGCTATGTTTATTTCCA 143 373 584 Antisense
TCGTAATGATAATTTCCCCAACCCG 552 557 702 Antisense
Sequence Source Affymetrix Proprietary Database