[Home] | [Total List]

[184452_at]

Description F56F11.1 /REP_DB=WormBase Gene ID /WP=CE11276 /TR=Q9TZ62 /GB=AAK21408.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 587
1 2 3 4 range
A 78.8
(-2.3)
A 		15.6
(-2.9)
A 		6.4
(-3)
A 		593.6
(3)
P 		587
B 52.7
(-2.8)
A 		46.9
(-2.9)
A 		40.2
(-3)
A 		479.9
(3)
P 		440
C 90.2
(-1.9)
A 		27.8
(-2.8)
A 		14
(-3)
A 		431.3
(3)
P 		417
avr 73.9
(-2.3) 		30.1
(-2.9) 		20.2
(-3) 		501.6
(3) 		481

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 7.2
(-3)
A 		26
(0.1)
A 		29.5
(0.7)
A 		43.3
(2.9)
A 		11.3
(-2.3)
A 		43.8
(3)
A 		37
B 14.4
(-1.7)
A 		5.8
(-3)
A 		13.3
(-1.9)
A 		20.7
(-0.8)
A 		13.9
(-1.8)
A 		47
(3)
A 		41
C 60.3
(3)
A 		12.9
(-3)
A 		13
(-3)
A 		60.4
(3)
A 		14.6
(-2.8)
A 		41.7
(0.6)
A 		48
avr 27.3
(-0.3) 		14.9
(-2.7) 		18.6
(-2) 		41.5
(2.5) 		13.3
(-3) 		44.2
(3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 28.7
(-1.1)
A 		3.4
(-2.9)
A 		1.7
(-3)
A 		86.9
(3)
P 		85
B 16.8
(-2.5)
A 		11.6
(-2.9)
A 		9.3
(-3)
A 		102.3
(3)
P 		93
C 29.9
(-0.8)
A 		8
(-2.7)
A 		4.9
(-3)
A 		72.7
(3)
P 		68
avr 25.1
(-1.6) 		7.7
(-2.8) 		5.3
(-3) 		87.3
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.3
(-3)
A 		9.2
(1.9)
A 		6.4
(0.2)
A 		11
(3)
A 		3.4
(-1.7)
A 		10.7
(2.8)
A 		10
B 5
(-1.8)
A 		1.9
(-3)
A 		3.2
(-2.5)
A 		5.5
(-1.6)
A 		5.6
(-1.6)
A 		17.5
(3)
A 		16
C 22.3
(3)
A 		3.9
(-2.8)
A 		3.3
(-3)
A 		12.2
(-0.2)
A 		4.7
(-2.6)
A 		14
(0.4)
A 		19
avr 9.5
(0.2) 		5
(-2.6) 		4.3
(-3) 		9.6
(0.2) 		4.6
(-2.8) 		14.1
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184452_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6350
Sequence Type Exemplar sequence
Representative Public ID F56F11.1 NCBI
Target Description F56F11.1 /REP_DB=WormBase Gene ID /WP=CE11276 /TR=Q9TZ62 /GB=AAK21408.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065233(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065233 NCBI Caenorhabditis elegans F56F11.1 (F56F11.1) mRNA, complete cds. 11/11 None
F56F11.1 ENSEMBL cdna:known chromosome:CEL140:III:2891752:2892603:1 gene:F56F11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006307 8/11 Cross Hyb Matching Probes None
GENEFINDER00000006313 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2891751-2892603(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56F11.1
Entrez Gene 186406 Entrez gene
SwissProt Q9TZ62 EMBL-EBI
WormBase CE11276 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21408 Hypothetical protein F56F11.1 [Caenorhabditis elegans] ref|NP_497634.1| F56F11.1 [Caenorhabditis elegans] 1.0E-61
blast CAE69529 Hypothetical protein CBG15738 [Caenorhabditis briggsae] 2.0E-41
Sequence
Target Sequence 
>C. ELEGANS:184452_AT
aatgccaacatcaattgtatttcttaccatacttttaataatccaatactcggaagccaa
tattatctggaggtatcaaagatccgatggagaacctcaacgggatattgatttttcgga
gcacacctggacgccactaggccctgcgcaaatgcaggactactacggagcacaggcgca
ggctcagaggtccctgcccgctgaaattgaggagcagcagagcttcaagtttatggaggc
accggtctccctgagcaatccggtattcaatgtattttccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCCAACATCAATTGTATTTCTT 460 167 18 Antisense
AATCCAATACTCGGAAGCCAATATT 374 167 57 Antisense
GATCCGATGGAGAACCTCAACGGGA 181 417 98 Antisense
TGATTTTTCGGAGCACACCTGGACG 675 559 126 Antisense
CCACTAGGCCCTGCGCAAATGCAGG 426 275 151 Antisense
TGCAGGACTACTACGGAGCACAGGC 621 575 170 Antisense
GTCCCTGCCCGCTGAAATTGAGGAG 324 475 207 Antisense
GAGGAGCAGCAGAGCTTCAAGTTTA 30 405 226 Antisense
AGTTTATGGAGGCACCGGTCTCCCT 485 61 245 Antisense
CTCCCTGAGCAATCCGGTATTCAAT 474 233 264 Antisense
ATCCGGTATTCAATGTATTTTCCAA 444 39 275 Antisense
Sequence Source Affymetrix Proprietary Database