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[184451_at]

Description Y57G7A.1 /REP_DB=WormBase Gene ID /WP=CE19630 /TR=O76628 /GB=AAC26296.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 82      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 63      6grp_total > 81      4grp_total > 53      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 324
(3)
P 		315.6
(2.5)
P 		218.4
(-3)
P 		289.6
(1)
P 		106
B 327
(3)
P 		222.7
(-3)
P 		326.3
(3)
P 		289.4
(0.8)
P 		104
C 311.3
(0.2)
P 		374.6
(3)
P 		337.4
(1.3)
P 		241
(-3)
P 		134
avr 320.8
(3) 		304.3
(0.9) 		294
(-0.4) 		273.3
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 936
1 2 3 4 5 6 range
A 359.8
(-2.8)
P 		334.2
(-3)
P 		556.7
(-1.3)
P 		1114.8
(3)
P 		726.2
(0)
P 		366
(-2.8)
P 		781
B 331.9
(-3)
P 		355.3
(-2.8)
P 		580.5
(-0.5)
P 		926
(3)
P 		786
(1.6)
P 		331.7
(-3)
P 		594
C 298
(-3)
P 		346.7
(-2.7)
P 		434.8
(-2.1)
P 		1233.5
(3)
P 		662.6
(-0.7)
P 		398.7
(-2.4)
P 		936
avr 329.9
(-3) 		345.4
(-2.9) 		524
(-1.5) 		1091.4
(3) 		724.9
(0.1) 		365.5
(-2.7) 		762
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 118
(3)
P 		68.5
(-0.9)
P 		57.1
(-1.8)
P 		42.4
(-3)
P 		76
B 104.3
(3)
P 		55
(-3)
P 		75.6
(-0.5)
P 		61.7
(-2.2)
P 		49
C 103
(1.9)
P 		107.7
(2.2)
P 		117.6
(3)
P 		40.6
(-3)
P 		77
avr 108.4
(3) 		77.1
(-0.1) 		83.4
(0.5) 		48.2
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 66.3
(-3)
P 		118.8
(-1.5)
P 		121.2
(-1.5)
P 		282.7
(3)
P 		219.1
(1.2)
P 		89.1
(-2.4)
P 		216
B 115.5
(-3)
P 		118.3
(-2.9)
P 		141
(-2.2)
P 		245.3
(0.8)
P 		319.3
(3)
P 		123.7
(-2.8)
P 		204
C 110.5
(-2.8)
P 		105.8
(-3)
P 		110.7
(-2.8)
P 		248.1
(3)
P 		214.4
(1.6)
P 		133.5
(-1.8)
P 		142
avr 97.4
(-3) 		114.3
(-2.4) 		124.3
(-2) 		258.7
(3) 		250.9
(2.7) 		115.4
(-2.3) 		161
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184451_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5981
Sequence Type Exemplar sequence
Representative Public ID Y57G7A.1 NCBI
Target Description Y57G7A.1 /REP_DB=WormBase Gene ID /WP=CE19630 /TR=O76628 /GB=AAC26296.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061542(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061542 NCBI Caenorhabditis elegans Y57G7A.1 (Y57G7A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000014171 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1298515:1299701:1 11/11 None
Y57G7A.1 ENSEMBL cdna:known chromosome:CEL140:II:1298500:1299705:1 gene:Y57G7A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014158 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1298513-1299700(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G7A.1
Entrez Gene 190358 Entrez gene
SwissProt O76628 EMBL-EBI
WormBase CE19630 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26296 Hypothetical protein Y57G7A.1 [Caenorhabditis elegans] ref|NP_493943.1| Y57G7A.1 [Caenorhabditis elegans] 2.0E-74
blast CAE62984 Hypothetical protein CBG07208 [Caenorhabditis briggsae] 1.0E-58
Sequence
Target Sequence 
>C. ELEGANS:184451_AT
aattggcaaacttctccaggttcctgacaaggatccgaccctaaaagcgttggtctacaa
agaagccctgccaaaagctaaccaaaagctgcacgataccgtatactgggtgccagctac
cacgcaattctcggctcggaggattactgtaatgaaccaggggaagttgtattccacgtg
gacttatgacatgttgctccaaagaagtgattgctcgagtagaagcaccccactcgcaga
tcttcccggctgcaaagccaacacgtcttctccaaaaacgctgtgtagcgtccatacatc
attatttgataacgaccttggctctgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGGCAAACTTCTCCAGGTTCCT 545 179 69 Antisense
AGGTTCCTGACAAGGATCCGACCCT 641 55 86 Antisense
GCGTTGGTCTACAAAGAAGCCCTGC 540 291 115 Antisense
GAAGCCCTGCCAAAAGCTAACCAAA 633 343 130 Antisense
AAAGCTGCACGATACCGTATACTGG 333 125 153 Antisense
CGTATACTGGGTGCCAGCTACCACG 316 245 168 Antisense
GCAATTCTCGGCTCGGAGGATTACT 443 321 192 Antisense
GATTGCTCGAGTAGAAGCACCCCAC 632 433 277 Antisense
GCCAACACGTCTTCTCCAAAAACGC 46 279 325 Antisense
CGCTGTGTAGCGTCCATACATCATT 468 255 347 Antisense
ATTTGATAACGACCTTGGCTCTGCG 342 17 372 Antisense
Sequence Source Affymetrix Proprietary Database