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[184450_at]

Description C17B7.11 /REP_DB=WormBase Gene ID /WP=CE16859 /TR=O45159 /GB=AAC04395.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 08      4grp_high_8_8 > 44      6grp_highest_nonorm > 81      6grp_total > 42      4grp_total > 51      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 224.3
(3)
P 		191.9
(-2.4)
P 		188.1
(-3)
P 		197.2
(-1.5)
P 		36
B 181.6
(-2.7)
P 		275.3
(3)
P 		211.7
(-0.9)
P 		176.6
(-3)
P 		99
C 251.8
(0.7)
P 		249.2
(0.5)
P 		277.9
(3)
P 		208.5
(-3)
P 		69
avr 219.2
(0.4) 		238.8
(3) 		225.9
(1.3) 		194.1
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 362
1 2 3 4 5 6 range
A 243.3
(-0.9)
P 		260.8
(-0.5)
P 		453.4
(3)
P 		298.7
(0.2)
P 		157.1
(-2.4)
P 		126.8
(-3)
P 		327
B 229.4
(-1.1)
P 		299.8
(0.1)
P 		477.2
(3)
P 		231.8
(-1.1)
P 		216.5
(-1.3)
P 		115.6
(-3)
P 		362
C 254.3
(0.8)
P 		288.9
(2.1)
P 		314.7
(3)
P 		279.6
(1.7)
P 		155.4
(-2.7)
P 		147.4
(-3)
P 		167
avr 242.3
(-0.6) 		283.2
(0.2) 		415.1
(3) 		270
(-0.1) 		176.3
(-2) 		129.9
(-3) 		285
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 81.7
(3)
P 		41.7
(-1.5)
P 		49.2
(-0.7)
P 		28.9
(-3)
P 		53
B 57.9
(1)
P 		68
(3)
P 		49.1
(-0.7)
P 		37.6
(-3)
P 		30
C 83.3
(1.7)
P 		71.6
(0.5)
P 		96.9
(3)
P 		35.2
(-3)
P 		62
avr 74.3
(3) 		60.4
(0.9) 		65.1
(1.6) 		33.9
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 44.8
(-1.8)
P 		92.7
(2.5)
P 		98.7
(3)
P 		75.7
(1)
P 		47.4
(-1.5)
P 		30.9
(-3)
P 		68
B 79.8
(0)
P 		99.8
(1.7)
P 		115.9
(3)
P 		61.4
(-1.5)
P 		88
(0.7)
P 		43.1
(-3)
P 		73
C 94.3
(3)
P 		88.1
(2.2)
P 		80.1
(1.1)
P 		56.2
(-2.1)
P 		50.3
(-2.9)
P 		49.4
(-3)
P 		45
avr 73
(0.4) 		93.5
(2.5) 		98.2
(3) 		64.4
(-0.6) 		61.9
(-0.8) 		41.1
(-3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184450_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15505
Sequence Type Exemplar sequence
Representative Public ID C17B7.11 NCBI
Target Description C17B7.11 /REP_DB=WormBase Gene ID /WP=CE16859 /TR=O45159 /GB=AAC04395.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071528(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071528 NCBI Caenorhabditis elegans C17B7.11 (C17B7.11) mRNA, complete cds. 11/11 None
SNAP00000020311 ENSEMBL cdna:SNAP chromosome:CEL140:V:3344082:3346296:-1 11/11 None
GENEFINDER00000020318 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3345265:3346296:-1 11/11 None
C17B7.11 ENSEMBL cdna:known chromosome:CEL140:V:3345170:3346310:-1 gene:C17B7.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3345264-3346296(-) 100.0 100.0
chrV:3276913-3277957(-) 91.72 91.72
Public Domain and Genome References
Gene Title
Ensembl C17B7.11
Entrez Gene 182711 Entrez gene
SwissProt O45159 EMBL-EBI
WormBase CE16859 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04395 Hypothetical protein C17B7.11 [Caenorhabditis elegans] ref|NP_503929.1| C17B7.11 [Caenorhabditis elegans] 1.0E-164
blast AAC04395 Hypothetical protein C17B7.11 [Caenorhabditis elegans] ref|NP_503929.1| C17B7.11 [Caenorhabditis elegans] 1.0E-161
blast NP_503905 T28A11.21 [Caenorhabditis elegans] gb|AAC48129.2| Hypothetical protein T28A11.21 [Caenorhabditis elegans] 1.0E-144
blast NP_503905 T28A11.21 [Caenorhabditis elegans] gb|AAC48129.2| Hypothetical protein T28A11.21 [Caenorhabditis elegans] 1.0E-142
blast AAC68938 Hypothetical protein T12B5.11 [Caenorhabditis elegans] ref|NP_497302.1| T12B5.11 [Caenorhabditis elegans] 7.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 9.2E-62
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.3E-11
Sequence
Target Sequence 
>C. ELEGANS:184450_AT
ttatcacatctttcatcaactctttgaaatctgagaaaagtgttcatgtgaagcaaatct
ccctttccaacttctcattcaatgatgttcttattattctacaatgtctcaatgaaaaaa
cactggaaacaattaatttgagcaatccaagccaaactaatcaactcgcccagattactc
atttaaaccaatggaaaactgcaaagaatttcgaactttgcaattctctactggacaaca
gtgaccaactagaacatctttttcactttgaagaatttggttgcagaactgatgtctttt
cagtagaaaatgcaattaaagttagagatgatcttatgaaaagaagttcattccgaacat
gccgcatatatttcaatgtgccacagtcaaatccagtcgacattgcaaaagttttcaagc
cggactatgctggtggcaatgagtattcgattgaatattcagatgatggcaataaattcg
ctattgattgttttcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCACATCTTTCATCAACTCTTT 98 681 419 Antisense
ATTTCGAACTTTGCAATTCTCTACT 309 17 626 Antisense
AATTCTCTACTGGACAACAGTGACC 233 175 640 Antisense
AACAGTGACCAACTAGAACATCTTT 426 137 655 Antisense
AACTAGAACATCTTTTTCACTTTGA 674 139 665 Antisense
TGGTTGCAGAACTGATGTCTTTTCA 230 551 696 Antisense
AGAAGTTCATTCCGAACATGCCGCA 224 75 760 Antisense
TTCATTCCGAACATGCCGCATATAT 561 689 765 Antisense
GCCGCATATATTTCAATGTGCCACA 547 285 779 Antisense
ATGCTGGTGGCAATGAGTATTCGAT 147 41 845 Antisense
TAAATTCGCTATTGATTGTTTTCGC 311 641 891 Antisense
Sequence Source Affymetrix Proprietary Database