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[184447_at]

Description Y59A8B.22 /REP_DB=WormBase Gene ID /WP=CE24494 /TR=Q9NES0 /GB=CAB60945.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 11      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 79.7
(-3)
P 		113.8
(-0.7)
A 		81
(-2.9)
A 		170.4
(3)
A 		91
B 81.5
(-1.4)
P 		98.9
(2.1)
A 		73.7
(-3)
A 		103.1
(3)
P 		29
C 131.9
(1.9)
P 		82.3
(-3)
A 		93.5
(-1.9)
A 		142.8
(3)
P 		61
avr 97.7
(-1.4) 		98.3
(-1.3) 		82.7
(-3) 		138.8
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 175.2
(3)
P 		119.3
(1)
A 		69.7
(-0.8)
A 		11.1
(-2.9)
A 		9.3
(-3)
A 		48.7
(-1.6)
A 		166
B 108.9
(3)
P 		83.3
(0.4)
A 		61.6
(-1.8)
A 		66.3
(-1.3)
A 		49.2
(-3)
P 		71.1
(-0.8)
A 		60
C 121.6
(2.4)
P 		112.3
(1.7)
A 		79.8
(-1)
A 		128.6
(3)
A 		55.8
(-3)
A 		69.3
(-1.9)
P 		73
avr 135.2
(3) 		105
(1.1) 		70.4
(-1) 		68.7
(-1.1) 		38.1
(-3) 		63
(-1.5) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 29
(3)
P 		24.7
(-0.3)
A 		21.2
(-3)
A 		24.9
(-0.2)
A 		8
B 26
(3)
P 		24.4
(1.9)
A 		17.1
(-3)
A 		22
(0.3)
P 		9
C 43.7
(3)
P 		23.7
(-3)
A 		32.6
(-0.3)
A 		24.1
(-2.9)
P 		20
avr 32.9
(3) 		24.3
(-2.5) 		23.6
(-3) 		23.7
(-2.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 32.3
(1.5)
P 		42.4
(3)
A 		15.2
(-1.1)
A 		2.8
(-3)
A 		2.8
(-3)
A 		11.9
(-1.6)
A 		40
B 37.9
(3)
P 		27.7
(0.3)
A 		15
(-3)
A 		17.6
(-2.3)
A 		20
(-1.7)
P 		26.5
(0)
A 		23
C 45.1
(3)
P 		34.3
(0.6)
A 		20.3
(-2.5)
A 		25.9
(-1.3)
A 		18
(-3)
A 		23.2
(-1.8)
P 		27
avr 38.4
(3) 		34.8
(2.1) 		16.8
(-2.2) 		15.4
(-2.6) 		13.6
(-3) 		20.5
(-1.3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184447_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14010
Sequence Type Exemplar sequence
Representative Public ID Y59A8B.22 NCBI
Target Description Y59A8B.22 /REP_DB=WormBase Gene ID /WP=CE24494 /TR=Q9NES0 /GB=CAB60945.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075117(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075117 NCBI Caenorhabditis elegans Y59A8B.22 (Y59A8B.22) mRNA, complete cds. 11/11 None
GENEFINDER00000028726 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17971853:17982656:-1 11/11 None
Y59A8B.22.2 ENSEMBL cdna:known chromosome:CEL140:V:17971123:17982657:-1 gene:Y59A8B.22 11/11 None
Y59A8B.22.1 ENSEMBL cdna:known chromosome:CEL140:V:17971167:17982657:-1 gene:Y59A8B.22 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17971852-17982656(-) 93.52 100.0
Public Domain and Genome References
Gene Title
Ensembl Y59A8B.22
Entrez Gene 190399 Entrez gene
SwissProt Q9NES0 EMBL-EBI
WormBase CE32025 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.20528.1.S1_S_AT similar to Sorting nexin-6 (TRAF4-associated factor 2) cfa
RAE230B:1384760_AT similar to Sorting nexin 6 (TRAF4-associated factor 2) rn
RAT230_2:1384760_AT similar to Sorting nexin 6 (TRAF4-associated factor 2) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60945 Hypothetical protein Y59A8B.22 [Caenorhabditis elegans] ref|NP_507518.2| Y59A8B.22 [Caenorhabditis elegans] 0.0
blast CAE61697 Hypothetical protein CBG05645 [Caenorhabditis briggsae] 0.0
blast XP_791140 PREDICTED: similar to Sorting nexin 6 (TRAF4-associated factor 2) [Strongylocentrotus purpuratus] 3.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR001683 EMBL-EBI Phox-like 5.1E-19
Pfam IPR001683 EMBL-EBI Phox-like 2.8E-19
Sequence
Target Sequence 
>C. ELEGANS:184447_AT
gttactgtgacttttattttcggcgaaattttcaaaattacagaagacgtagtcgcctca
ttctcaaaaattggtgatagttttgaacgaattgcacgtggagaaccgaataaatcattg
gcacgtacatttgcacagggagccgacgccatgtttaagctcaagaaggtaatgctggaa
atttttccgaatttttgggttactcccgaaaaccttctaaatcacctattttttttgcag
gtagaatcccgttcatcaaacgatgaagagcttaaattgggcgatacacttcactatttt
gcacgtgatacacaggctgcaaaggatcttttgtatcggagaatgagatgtttggcaaat
tacgaagcagcgaataagaatttggaacgagctcgagccaaaaatcgagaaattccaaag
gcagaagccgaacaatcagaagcatgcaaaaaattcgaagagatcactggactatcgaaa
aatgagctaaaagagctgaaaactcgcagagttcaggcttttaagaagaatttgacagat
ttggctgagcttgagattaagcattcaaaggccgaaatctcgttgctccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTACTGTGACTTTTATTTTCGGCG 704 445 1210 Antisense
ACAGAAGACGTAGTCGCCTCATTCT 327 109 1249 Antisense
ACGAATTGCACGTGGAGAACCGAAT 327 53 1296 Antisense
GTACATTTGCACAGGGAGCCGACGC 451 457 1334 Antisense
GCCGACGCCATGTTTAAGCTCAAGA 369 283 1351 Antisense
TTGCAGGTAGAATCCCGTTCATCAA 207 703 1444 Antisense
GGCGATACACTTCACTATTTTGCAC 705 541 1489 Antisense
ATTTTGCACGTGATACACAGGCTGC 232 13 1505 Antisense
GAAGCCGAACAATCAGAAGCATGCA 402 343 1633 Antisense
AACTCGCAGAGTTCAGGCTTTTAAG 289 141 1710 Antisense
CAAAGGCCGAAATCTCGTTGCTCCG 91 193 1775 Antisense
Sequence Source Affymetrix Proprietary Database