[Home] | [Total List]

[184445_s_at]

Description F33E11.3 /REP_DB=WormBase Gene ID /WP=CE28294 /TR=O61853 /GB=AAK68367.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 21      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 155.7
(0.3)
P 		119.9
(-1.2)
A 		78
(-3)
A 		221.1
(3)
P 		143
B 160.5
(2.6)
P 		165.1
(3)
A 		102.4
(-3)
M 		151.8
(1.7)
P 		63
C 160.9
(0)
P 		117.2
(-2.1)
A 		99
(-3)
A 		222.8
(3)
P 		124
avr 159
(0.7) 		134.1
(-0.7) 		93.1
(-3) 		198.6
(3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 203.7
(3)
P 		132.5
(-1.8)
A 		114.1
(-3)
A 		146.7
(-0.8)
M 		128.2
(-2.1)
P 		168.9
(0.7)
P 		90
B 200.9
(3)
P 		150.6
(-0.7)
P 		136.7
(-1.7)
A 		138.6
(-1.6)
A 		118.8
(-3)
A 		130.7
(-2.1)
P 		82
C 170.2
(3)
P 		111.7
(-3)
P 		150.1
(0.9)
A 		143.7
(0.3)
M 		124.8
(-1.7)
A 		112.5
(-2.9)
P 		59
avr 191.6
(3) 		131.6
(-2.3) 		133.6
(-2.1) 		143
(-1.3) 		123.9
(-3) 		137.4
(-1.8) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 56.7
(3)
P 		26
(-2.1)
A 		20.4
(-3)
A 		32.4
(-1)
P 		36
B 51.2
(3)
P 		40.8
(0.7)
A 		23.7
(-3)
M 		32.4
(-1.1)
P 		28
C 53.3
(3)
P 		33.7
(-3)
A 		34.5
(-2.8)
A 		37.6
(-1.8)
P 		20
avr 53.7
(3) 		33.5
(-1.4) 		26.2
(-3) 		34.1
(-1.3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 37.5
(0.4)
P 		47.1
(3)
A 		24.9
(-3)
A 		37.2
(0.3)
M 		38.7
(0.7)
P 		41.1
(1.4)
P 		22
B 69.9
(3)
P 		50.1
(-0.2)
P 		33.2
(-3)
A 		36.7
(-2.4)
A 		48.3
(-0.5)
A 		48.7
(-0.5)
P 		37
C 63.1
(3)
P 		34.1
(-2.1)
P 		38.2
(-1.4)
A 		28.9
(-3)
M 		40.4
(-1)
A 		37.6
(-1.5)
P 		34
avr 56.8
(3) 		43.8
(-0.2) 		32.1
(-3) 		34.3
(-2.5) 		42.5
(-0.5) 		42.5
(-0.5) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184445_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15199
Sequence Type Exemplar sequence
Representative Public ID F33E11.3 NCBI
Target Description F33E11.3 /REP_DB=WormBase Gene ID /WP=CE28294 /TR=O61853 /GB=AAK68367.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070770(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070770 NCBI Caenorhabditis elegans F33E11.3 (F33E11.3) mRNA, complete cds. 11/11 None
SNAP00000030181 ENSEMBL cdna:SNAP chromosome:CEL140:V:300187:311364:-1 11/11 None
GENEFINDER00000030186 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:300140:304525:-1 11/11 None
F33E11.3 ENSEMBL cdna:known chromosome:CEL140:V:299896:304542:-1 gene:F33E11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:300186-312726(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33E11.3
Entrez Gene 178556 Entrez gene
SwissProt O61853 EMBL-EBI
WormBase CE28294 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604589_AT similar to smooth muscle myosin heavy chain 11 isoform SM1-like cfa
CANINE_2:CFA.21599.1.S1_S_AT similar to smooth muscle myosin heavy chain 11 isoform SM1-like cfa
CANINE_2:CFA.2313.1.S1_AT similar to smooth muscle myosin heavy chain 11 isoform SM1-like cfa
CANINE_2:CFAAFFX.4910.1.S1_S_AT similar to smooth muscle myosin heavy chain 11 isoform SM1-like cfa
DROSOPHILA_2:1637992_AT dm
DROSGENOME1:150515_AT dm
CHICKEN:GGA.19108.1.S1_S_AT similar to smooth muscle myosin heavy chain 11 isoform SM1-like gga
CHICKEN:GGA.4534.1.S1_AT similar to smooth muscle myosin heavy chain 11 isoform SM1-like gga
CHICKEN:GGAAFFX.12025.1.S1_AT similar to smooth muscle myosin heavy chain 11 isoform SM1-like gga
CHICKEN:GGAAFFX.21641.1.S1_S_AT similar to smooth muscle myosin heavy chain 11 isoform SM1-like gga
HU35KSUBC:RC_AA449986_AT smooth muscle myosin heavy chain 11 isoform SM1-like hs
U133_X3P:HS2.346257.2.S1_3P_A_AT smooth muscle myosin heavy chain 11 isoform SM1-like hs
U133_X3P:HS2.346257.1.S2_3P_AT smooth muscle myosin heavy chain 11 isoform SM1-like hs
HG-U133_PLUS_2:1553955_AT smooth muscle myosin heavy chain 11 isoform SM1-like hs
HG-U133_PLUS_2:1554145_A_AT smooth muscle myosin heavy chain 11 isoform SM1-like hs
HG-U95C:62969_AT smooth muscle myosin heavy chain 11 isoform SM1-like hs
HG-U133_PLUS_2:241351_AT Smooth muscle myosin heavy chain 11 isoform SM1-like hs
HG-U133B:241351_AT Smooth muscle myosin heavy chain 11 isoform SM1-like hs
HG-U95C:66086_AT Smooth muscle myosin heavy chain 11 isoform SM1-like hs
HG-U95D:86012_AT Smooth muscle myosin heavy chain 11 isoform SM1-like hs
HG-U95D:87967_AT Smooth muscle myosin heavy chain 11 isoform SM1-like hs
HG-U95E:89379_AT Smooth muscle myosin heavy chain 11 isoform SM1-like hs
HU35KSUBA:RC_D11544_AT Smooth muscle myosin heavy chain 11 isoform SM1-like hs
U133_X3P:HS.271916.0.A1_3P_AT Smooth muscle myosin heavy chain 11 isoform SM1-like hs
MG-U74AV2:104058_AT RIKEN cDNA 1110018J12 gene mm
MOE430A:1428655_AT RIKEN cDNA 1110018J12 gene mm
MOUSE430A_2:1428655_AT RIKEN cDNA 1110018J12 gene mm
MOUSE430_2:1428655_AT RIKEN cDNA 1110018J12 gene mm
MU19KSUBB:TC31134_AT RIKEN cDNA 1110018J12 gene (1110018J12Rik), mRNA mm
MU19KSUBC:TC35431_AT RIKEN cDNA 1110018J12 gene (1110018J12Rik), mRNA mm
Protein Similarities
Method ID Description E-Value
blast AAK68367 Hypothetical protein F33E11.3 [Caenorhabditis elegans] ref|NP_503171.1| F33E11.3 [Caenorhabditis elegans] 0.0
blast A88925 protein F33E11.3 [imported] - Caenorhabditis elegans 0.0
blast AAK68369 Hypothetical protein F33E11.6 [Caenorhabditis elegans] ref|NP_503173.1| F33E11.6 [Caenorhabditis elegans] 1.0E-168
blast CAE66756 Hypothetical protein CBG12107 [Caenorhabditis briggsae] 1.0E-155
Protein Domains
Database ID Description E-Value
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 1.3E-9
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 9.4E-16
Sequence
Target Sequence 
>C. ELEGANS:184445_S_AT
tgctcccgagcttccagaggagcccaaaactgttccagaagttgtagaagaagccccgaa
aacccatgatcatctgaaatcagagcttcacctcctcgaatccaggaatgaggagctcca
aaaagagcgtgatcggcttttcgtggacaactcgctggttaaacggaagcttgagattgc
catggcagatgctcaactagatgctccagcacctgatatggatcaaatctggtcgatcgg
aatggaacgacgtgatgattggcttcagagggttcagagagcggagaaggcgcttaggtt
ttatgagattgagttcgaaatactgctccgccacgagctggcttccgaagagcacctaaa
acaagtgctcgacgaactcgaatcggtttccaaacagaatcaccgactggaagatgagct
ggaaagtgtcagaagggggtatgaatcgcagctcggagacctctcagagcatcttgcaac
tc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCCCGAGCTTCCAGAGGAGCCC 99 581 3033 Antisense
TAGAAGAAGCCCCGAAAACCCATGA 195 651 3077 Antisense
CTTCACCTCCTCGAATCCAGGAATG 646 221 3118 Antisense
GTGATCGGCTTTTCGTGGACAACTC 518 483 3161 Antisense
GGAAGCTTGAGATTGCCATGGCAGA 407 531 3197 Antisense
GGCAGATGCTCAACTAGATGCTCCA 38 537 3216 Antisense
GATGCTCCAGCACCTGATATGGATC 610 413 3232 Antisense
TTGAGTTCGAAATACTGCTCCGCCA 419 703 3341 Antisense
CCACGAGCTGGCTTCCGAAGAGCAC 152 273 3363 Antisense
GTATGAATCGCAGCTCGGAGACCTC 475 455 3471 Antisense
GACCTCTCAGAGCATCTTGCAACTC 149 383 3490 Antisense
Sequence Source Affymetrix Proprietary Database