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[184444_at]

Description Y50C1A.1 /REP_DB=WormBase Gene ID /WP=CE24397 /TR=Q9N4T5 /GB=AAF60741.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 27      6grp_total > 37      4grp_total > 62      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 231.6
(3)
P 		214.5
(2.2)
P 		225.6
(2.7)
P 		101.5
(-3)
A 		130
B 197.1
(3)
P 		176.3
(-0.1)
M 		156.8
(-3)
P 		166.2
(-1.6)
A 		40
C 222.9
(3)
P 		164.5
(-3)
A 		203.9
(1)
P 		214.6
(2.1)
P 		58
avr 217.2
(3) 		185.1
(-0.4) 		195.4
(0.7) 		160.8
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 161
(-0.1)
A 		208.2
(3)
P 		171.1
(0.5)
P 		144.3
(-1.2)
P 		117.9
(-3)
A 		182.4
(1.3)
P 		90
B 240.3
(3)
P 		238.6
(2.9)
P 		175.9
(0)
P 		194.7
(0.9)
P 		110.7
(-3)
A 		187
(0.5)
P 		130
C 400.4
(3)
P 		245.4
(-0.2)
A 		147.7
(-2.2)
A 		108.9
(-3)
A 		155
(-2.1)
M 		241.6
(-0.3)
P 		292
avr 267.2
(3) 		230.7
(1.4) 		164.9
(-1.4) 		149.3
(-2.1) 		127.9
(-3) 		203.7
(0.3) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 84.3
(3)
P 		46.6
(-0.3)
P 		59
(0.8)
P 		14.9
(-3)
A 		69
B 62.8
(3)
P 		43.5
(-1.2)
M 		36.3
(-2.8)
P 		35.4
(-3)
A 		27
C 73.8
(3)
P 		47.3
(-1.2)
A 		71.1
(2.6)
P 		36.2
(-3)
P 		38
avr 73.6
(3) 		45.8
(-0.7) 		55.5
(0.6) 		28.8
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 29.7
(-3)
A 		74
(3)
P 		37.3
(-2)
P 		36.6
(-2.1)
P 		35.6
(-2.2)
A 		44.4
(-1)
P 		44
B 83.6
(3)
P 		79.4
(2.4)
P 		42.7
(-3)
P 		51.6
(-1.7)
P 		45
(-2.7)
A 		69.7
(1)
P 		41
C 148.4
(3)
P 		74.9
(-0.5)
A 		37.6
(-2.3)
A 		21.9
(-3)
A 		50.2
(-1.7)
M 		80.9
(-0.2)
P 		127
avr 87.2
(3) 		76.1
(1.7) 		39.2
(-2.7) 		36.7
(-3) 		43.6
(-2.2) 		65
(0.4) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184444_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2558
Sequence Type Exemplar sequence
Representative Public ID Y50C1A.1 NCBI
Target Description Y50C1A.1 /REP_DB=WormBase Gene ID /WP=CE24397 /TR=Q9N4T5 /GB=AAF60741.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058329(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058329 NCBI Caenorhabditis elegans Y50C1A.1 (Y50C1A.1) mRNA, complete cds. 11/11 None
SNAP00000037020 ENSEMBL cdna:SNAP chromosome:CEL140:I:398952:412513:1 11/11 None
GENEFINDER00000037022 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:398952:412513:1 11/11 None
Y50C1A.1 ENSEMBL cdna:known chromosome:CEL140:I:398894:412904:1 gene:Y50C1A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:398951-412513(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y50C1A.1
Entrez Gene 171633 Entrez gene
SwissProt Q9N4T5 EMBL-EBI
WormBase CE31379 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60741 Hypothetical protein Y50C1A.1 [Caenorhabditis elegans] ref|NP_490730.2| Y50C1A.1 [Caenorhabditis elegans] 0.0
blast CAE74389 Hypothetical protein CBG22120 [Caenorhabditis briggsae] 0.0
blast XP_219703 PREDICTED: similar to Cezanne 2 protein [Rattus norvegicus] 2.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR003323 EMBL-EBI Ovarian tumour, otubain 4.2E-35
Sequence
Target Sequence 
>C. ELEGANS:184444_AT
aatgaaattcgaacccacgtgcttcgaacttttcgtatttcctcatcaacacgtggcaaa
gagaaactaatcgatacggacgattgtattgcaagaatgaattcgacgtgcgttctcgca
tcggaattattgccaactcatcaccaatacatggacaaaataatcaatgaatacatgaaa
agtgcgaaacaacgattccaacagaatcagcgaacacaatcggatagtcggaaacggatt
agtcgaagtttcagtgcaagctcacttatgctcacgtgtatcggttgtgattcggaattc
aagccggcatctcaagtgacaaatatcatgtgtgatcaatgttttgcttggcaaaaaatg
agtgttctcacgtcgaattgcgaccaatttatgggaaattctgggccaccgtgcaaaagt
tcaacacttccgtcatttggtagtaatgatagtaatcagaatgataaggaaaatattgtg
gaggtacttaatgtggtgcctaaagatggagccaagacacttaccagtatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGAAATTCGAACCCACGTGCTTC 443 163 1447 Antisense
TTCGAACTTTTCGTATTTCCTCATC 127 697 1469 Antisense
ATTTCCTCATCAACACGTGGCAAAG 585 15 1483 Antisense
ATGAATTCGACGTGCGTTCTCGCAT 318 43 1543 Antisense
AGTCGAAGTTTCAGTGCAAGCTCAC 401 59 1687 Antisense
ACTTATGCTCACGTGTATCGGTTGT 150 103 1710 Antisense
GGAATTCAAGCCGGCATCTCAAGTG 669 529 1740 Antisense
GTGTTCTCACGTCGAATTGCGACCA 641 485 1808 Antisense
TGGGCCACCGTGCAAAAGTTCAACA 470 501 1848 Antisense
AAGTTCAACACTTCCGTCATTTGGT 652 155 1863 Antisense
GGAGCCAAGACACTTACCAGTATGC 123 523 1954 Antisense
Sequence Source Affymetrix Proprietary Database