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[184442_at]

Description ZC84.5 /REP_DB=WormBase Gene ID /WP=CE00353 /TR=SW:P34598 /GB=CAA79567.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 09      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 7.8
(-2.1)
A 		3.8
(-2.7)
A 		2
(-3)
A 		38.8
(3)
A 		37
B 24.3
(2.4)
A 		5
(-3)
A 		19.1
(1)
A 		26.4
(3)
A 		21
C 3.2
(-3)
A 		32.8
(0.6)
A 		21.5
(-0.7)
A 		51.9
(3)
A 		49
avr 11.8
(-3) 		13.9
(-2.5) 		14.2
(-2.5) 		39
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 11.2
(0.6)
A 		16.5
(2.6)
A 		5.4
(-1.5)
A 		1.4
(-3)
A 		11.1
(0.6)
A 		17.7
(3)
A 		16
B 14.9
(3)
A 		12.8
(2.1)
A 		1.8
(-2.8)
A 		3.2
(-2.2)
A 		3.7
(-1.9)
A 		1.3
(-3)
A 		14
C 17.8
(0.8)
A 		27.8
(3)
A 		2
(-2.8)
A 		7.3
(-1.6)
A 		19.4
(1.1)
A 		1
(-3)
A 		27
avr 14.6
(1.3) 		19
(3) 		3.1
(-3) 		4
(-2.7) 		11.4
(0.1) 		6.7
(-1.6) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.8
(-0.3)
A 		0.8
(-2.7)
A 		0.5
(-3)
A 		5.7
(3)
A 		5
B 7.7
(3)
A 		1.2
(-3)
A 		4.4
(-0)
A 		5.6
(1.1)
A 		7
C 1.1
(-3)
A 		9.4
(3)
A 		7.5
(1.6)
A 		8.8
(2.6)
A 		8
avr 3.9
(-2.8) 		3.8
(-3) 		4.1
(-2.4) 		6.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.1
(-1.1)
A 		5.9
(3)
A 		1.2
(-2)
A 		0.3
(-3)
A 		3.3
(0.2)
A 		4.3
(1.3)
A 		6
B 5.2
(3)
A 		4.3
(1.9)
A 		0.4
(-3)
A 		0.9
(-2.4)
A 		1.5
(-1.6)
A 		0.5
(-2.9)
A 		5
C 6.6
(1.6)
A 		8.5
(3)
A 		0.5
(-2.9)
A 		1.5
(-2.1)
A 		6.3
(1.4)
A 		0.3
(-3)
A 		8
avr 4.6
(1.3) 		6.2
(3) 		0.7
(-3) 		0.9
(-2.8) 		3.7
(0.3) 		1.7
(-1.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184442_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7125
Sequence Type Exemplar sequence
Representative Public ID ZC84.5 NCBI
Target Description ZC84.5 /REP_DB=WormBase Gene ID /WP=CE00353 /TR=SW:P34598 /GB=CAA79567.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000020252 ENSEMBL cdna:SNAP chromosome:CEL140:III:9205946:9207758:1 11/11 None
ZC84.5 ENSEMBL cdna:pseudogene chromosome:CEL140:III:9207179:9207758:1 gene:ZC84.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9207174-9207754(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZC84.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast P34598 Hypothetical protein ZC84.5 in chromosome III 2.0E-79
blast CAA79547 Hypothetical protein C38C10.3 [Caenorhabditis elegans] ref|NP_499063.1| C38C10.3 [Caenorhabditis elegans] sp|Q03568|YLD3_CAEEL Hypothetical protein C38C10.3 in chromosome III 2.0E-65
blast CAE65268 Hypothetical protein CBG10162 [Caenorhabditis briggsae] 1.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR007465 EMBL-EBI Protein of unknown function DUF508 1.5E-122
Sequence
Target Sequence 
>C. ELEGANS:184442_AT
atgacgccgtcgtctatcgtaacttctggagattctaaaaatctgatcagtcacgatacc
acttccaattccacttcaacatcctctgtaaagaagtttccgagatatacatattcttcg
ctcaaatgttatcccaaatacattacaatggtctatgtcaagtttttgctgctttattgt
gatgtttatcagaaacgtgcacaactcgcatttactgacgagtttccttcggattgccgt
ttggaagaagttgttatcaatttccatcaactttgttttcgccatcttcgtgatcagaac
ttcaatcctcgactctcattttgcatcggagatctcagctactggaattccaaaccactc
tttgcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACGCCGTCGTCTATCGTAACTT 183 43 13 Antisense
TCTGATCAGTCACGATACCACTTCC 248 609 54 Antisense
TTCCACTTCAACATCCTCTGTAAAG 384 699 81 Antisense
TATTCTTCGCTCAAATGTTATCCCA 597 663 124 Antisense
GAAACGTGCACAACTCGCATTTACT 533 357 204 Antisense
TACTGACGAGTTTCCTTCGGATTGC 50 645 225 Antisense
TTCCATCAACTTTGTTTTCGCCATC 127 701 274 Antisense
TTTTCGCCATCTTCGTGATCAGAAC 435 677 288 Antisense
GATCAGAACTTCAATCCTCGACTCT 493 421 304 Antisense
TCCTCGACTCTCATTTTGCATCGGA 335 593 318 Antisense
GGAATTCCAAACCACTCTTTGCAAA 490 533 356 Antisense
Sequence Source Affymetrix Proprietary Database