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[184441_at]

Description Y32B12B.1 /REP_DB=WormBase Gene ID /WP=CE19062 /TR=Q9XX36 /GB=CAA21004.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 3.6
(-3)
A 		2.7
(-3)
A 		2.5
(-3)
A 		198.3
(3)
P 		196
B 2.4
(-3)
A 		4
(-2.9)
A 		5.1
(-2.9)
A 		132
(3)
A 		130
C 2.3
(-3)
A 		6.9
(-2.8)
A 		2.4
(-3)
A 		141.9
(3)
P 		140
avr 2.8
(-3) 		4.5
(-2.9) 		3.3
(-3) 		157.4
(3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 3.1
(-2.7)
A 		1.4
(-3)
A 		3.8
(-2.6)
A 		5.3
(-2.4)
A 		13.3
(-1.1)
A 		39.1
(3)
A 		38
B 1.9
(-3)
A 		6.2
(-2.5)
A 		2.5
(-2.9)
A 		7.2
(-2.4)
A 		8.8
(-2.2)
A 		56.5
(3)
A 		55
C 2
(-3)
A 		2.4
(-3)
A 		6.1
(-2.7)
A 		2.5
(-3)
A 		5.2
(-2.8)
A 		85.2
(3)
A 		83
avr 2.3
(-3) 		3.3
(-2.9) 		4.1
(-2.8) 		5
(-2.7) 		9.1
(-2.3) 		60.3
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 1.3
(-2.9)
A 		0.6
(-3)
A 		0.7
(-3)
A 		29
(3)
P 		28
B 0.8
(-3)
A 		1
(-3)
A 		1.2
(-2.9)
A 		28.1
(3)
A 		27
C 0.8
(-3)
A 		2
(-2.7)
A 		0.8
(-3)
A 		23.9
(3)
P 		23
avr 1
(-3) 		1.2
(-2.9) 		0.9
(-3) 		27
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 0.6
(-2.9)
A 		0.5
(-3)
A 		0.8
(-2.8)
A 		1.3
(-2.5)
A 		4
(-0.7)
A 		9.5
(3)
A 		9
B 0.7
(-3)
A 		2.1
(-2.6)
A 		0.6
(-3)
A 		1.9
(-2.6)
A 		3.6
(-2.1)
A 		21.1
(3)
A 		21
C 0.8
(-2.9)
A 		0.7
(-3)
A 		1.5
(-2.8)
A 		0.5
(-3)
A 		1.7
(-2.7)
A 		28.5
(3)
A 		28
avr 0.7
(-3) 		1.1
(-2.9) 		1
(-2.9) 		1.2
(-2.8) 		3.1
(-2.2) 		19.7
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184441_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14413
Sequence Type Exemplar sequence
Representative Public ID Y32B12B.1 NCBI
Target Description Y32B12B.1 /REP_DB=WormBase Gene ID /WP=CE19062 /TR=Q9XX36 /GB=CAA21004.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074786(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074786 NCBI Caenorhabditis elegans Y32B12B.1 (Y32B12B.1) mRNA, complete cds. 11/11 None
GENEFINDER00000012877 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16537538:16540836:1 11/11 None
Y32B12B.1 ENSEMBL cdna:known chromosome:CEL140:V:16538216:16540836:1 gene:Y32B12B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16538215-16540836(+) 84.74 100.0
Public Domain and Genome References
Gene Title
Ensembl Y32B12B.1
Entrez Gene 189566 Entrez gene
SwissProt Q9XX36 EMBL-EBI
WormBase CE19062 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21004 Hypothetical protein Y32B12B.1 [Caenorhabditis elegans] ref|NP_507187.1| Y32B12B.1 [Caenorhabditis elegans] 1.0E-126
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507187.1 2 87-109,145-167
Y32B12B.1 2 87-109,145-167
GENEFINDER00000012877 3 99-121,179-201,237-259
Sequence
Target Sequence 
>C. ELEGANS:184441_AT
gaaggccgcgcaaaacttcaggaccccattctccagtttttccttaggaacgtcctacaa
ttcgaatcataaaaatcgaacatcgttctctaattctttctcgtcactgtttccggcgaa
aacaacagcgacaaagacattttttttttgtaatttggtcatttccaatttaatcgctat
gcctgtctaccagagtgttgttattgaagaaaatggcaatcgaaatggagaaaagacttt
atatattactccaaaaagcaaaaatgacactccaaagcagccgaagaagaagctgggcac
aatggcgagggttctgctcgccggagccatgattctaatttcattatttcttctcatttc
ctttggaaattatttgtatgagctttatggtcctgagccagagaaaaaagttgaaacatt
cgattcggtacaacgggaaaaggagccaaaatccgagctttctagatttatatctgcgaa
acacgtgttttcagctcgaccattcggtgtaatttgtgcaaacaccgtcacgcgcaaatg
cagacatttttgcacgcgctgcgagagtacggtacgcaaggtccgcaaacacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGCCGCGCAAAACTTCAGGACC 596 321 135 Antisense
ACATCGTTCTCTAATTCTTTCTCGT 240 107 214 Antisense
CTCGTCACTGTTTCCGGCGAAAACA 514 231 234 Antisense
TTTAATCGCTATGCCTGTCTACCAG 437 673 303 Antisense
AAATGACACTCCAAAGCAGCCGAAG 460 119 396 Antisense
AGCTGGGCACAATGGCGAGGGTTCT 353 79 425 Antisense
TCGCCGGAGCCATGATTCTAATTTC 364 599 452 Antisense
ATGAGCTTTATGGTCCTGAGCCAGA 172 45 512 Antisense
GAGCCAAAATCCGAGCTTTCTAGAT 228 385 577 Antisense
TGCACGCGCTGCGAGAGTACGGTAC 359 577 685 Antisense
CGGTACGCAAGGTCCGCAAACACGC 112 245 704 Antisense
Sequence Source Affymetrix Proprietary Database