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[184440_at]

Description Y18D10A.3 /REP_DB=WormBase Gene ID /WP=CE21399 /TR=Q9XW15 /GB=CAA22319.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 16      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 40.2
(-3)
A 		71.9
(-1.8)
A 		75.1
(-1.7)
A 		200.3
(3)
A 		160
B 40
(-3)
A 		83.3
(0.9)
A 		79.1
(0.5)
A 		106.3
(3)
A 		66
C 55.2
(-2.7)
A 		52.2
(-3)
A 		63.9
(-2)
A 		122.2
(3)
A 		70
avr 45.1
(-3) 		69.1
(-1.5) 		72.7
(-1.3) 		142.9
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 52.8
(0.2)
A 		66.3
(1.8)
A 		75
(2.8)
A 		26.1
(-3)
A 		56.9
(0.7)
A 		76.6
(3)
A 		51
B 62.4
(0.4)
A 		61.4
(0.2)
A 		81.9
(3)
A 		40.8
(-2.5)
A 		63.9
(0.6)
A 		37.4
(-3)
A 		45
C 57.3
(-0.6)
A 		93.8
(3)
A 		84.1
(2)
A 		33.6
(-3)
A 		72.1
(0.8)
A 		58.8
(-0.5)
A 		60
avr 57.5
(0.1) 		73.8
(2.2) 		80.3
(3) 		33.5
(-3) 		64.3
(0.9) 		57.6
(0.1) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 14.6
(-3)
A 		15.6
(-2.6)
A 		19.6
(-1)
A 		29.3
(3)
A 		15
B 12.8
(-3)
A 		20.6
(1.7)
A 		18.3
(0.3)
A 		22.7
(3)
A 		10
C 18.3
(-0.3)
A 		15
(-3)
A 		22.3
(3)
A 		20.6
(1.6)
A 		7
avr 15.2
(-3) 		17.1
(-1.7) 		20.1
(0.3) 		24.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 9.7
(-1.9)
A 		23.6
(3)
A 		16.3
(0.4)
A 		6.6
(-3)
A 		17.2
(0.7)
A 		18.7
(1.3)
A 		17
B 21.7
(1.3)
A 		20.4
(0.8)
A 		19.9
(0.6)
A 		10.8
(-3)
A 		26
(3)
A 		13.9
(-1.8)
A 		15
C 21.3
(1)
A 		28.6
(3)
A 		21.4
(1)
A 		6.8
(-3)
A 		23.3
(1.5)
A 		19.7
(0.6)
A 		22
avr 17.6
(0.5) 		24.2
(3) 		19.2
(1.1) 		8.1
(-3) 		22.2
(2.3) 		17.4
(0.5) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184440_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2004
Sequence Type Exemplar sequence
Representative Public ID Y18D10A.3 NCBI
Target Description Y18D10A.3 /REP_DB=WormBase Gene ID /WP=CE21399 /TR=Q9XW15 /GB=CAA22319.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060840(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060840 NCBI Caenorhabditis elegans Y18D10A.3 (Y18D10A.3) mRNA, complete cds. 11/11 None
SNAP00000000410 ENSEMBL cdna:SNAP chromosome:CEL140:I:12818290:12821862:-1 11/11 None
Y18D10A.3 ENSEMBL cdna:known chromosome:CEL140:I:12818290:12823762:-1 gene:Y18D10A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000438 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12818220-12823693(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y18D10A.3
Entrez Gene 189472 Entrez gene
SwissProt Q9XW15 EMBL-EBI
WormBase CE21399 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248560_AT pyridoxamine 5'-phosphate oxidase-related at
CANINE:1606115_AT similar to apolipoprotein A-I binding protein cfa
CANINE_2:CFA.18173.1.S1_S_AT similar to apolipoprotein A-I binding protein cfa
DROSOPHILA_2:1626760_AT dm
DROSGENOME1:144782_AT dm
HG-U133_PLUS_2:225427_S_AT apolipoprotein A-I binding protein hs
HG-U133B:225427_S_AT apolipoprotein A-I binding protein hs
HU35KSUBB:RC_N68622_AT apolipoprotein A-I binding protein hs
U133_X3P:HS.6880.3.A1_3P_A_AT apolipoprotein A-I binding protein hs
HG-U95B:49488_AT apolipoprotein A-I binding protein hs
Protein Similarities
Method ID Description E-Value
blast CAA22319 Hypothetical protein Y18D10A.3 [Caenorhabditis elegans] ref|NP_493241.1| Y18D10A.3 [Caenorhabditis elegans] 0.0
blast CAA22319 Hypothetical protein Y18D10A.3 [Caenorhabditis elegans] ref|NP_493241.1| Y18D10A.3 [Caenorhabditis elegans] 1.0E-131
blast CAE63500 Hypothetical protein CBG07973 [Caenorhabditis briggsae] 1.0E-110
blast AAW27603 SJCHGC06839 protein [Schistosoma japonicum] 3.0E-52
blast AAW27603 SJCHGC06839 protein [Schistosoma japonicum] 6.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR004443 EMBL-EBI YjeF-related protein, N-terminal 1.3E-67
Pfam IPR004443 EMBL-EBI YjeF-related protein, N-terminal 1.3E-67
Sequence
Target Sequence 
>C. ELEGANS:184440_AT
gcttatggagcttgccggtttggcagcggctcaggctattgctgcacactatccaaagag
caacgtggcagtcttgtgtggacccggaaacaatggaggcgacggattcgtgtgtgctcg
acatcttcagcaatttggcttcaccccatcgatcgtctatcccaaagaatctcgaaacga
gctcatgaaatctctggttgttcaatgtgaaaccagttcaattccaatcacagccacact
tccaaccaatcttcaagcctttccactgatcgtcgatgctctattcggcttctccttcca
tccaccaactcgtgagccattcactgaaatgctcaagacagtgcgtgcttctggaattca
tgtgttctcaatcgatgttccttctggatgggatgtagagttgggagctccgagtggcaa
tgatgatgacgtcattcatccacattcggttatttcattaactcttccaaagttatgcat
gaaaaattggacgggaccacactttttgggtggacgttttgtgccgaagagccttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTATGGAGCTTGCCGGTTTGGCA 504 305 456 Antisense
TCAGGCTATTGCTGCACACTATCCA 426 623 486 Antisense
GGAGGCGACGGATTCGTGTGTGCTC 441 515 550 Antisense
TCGTGTGTGCTCGACATCTTCAGCA 670 605 563 Antisense
ATCTTCAGCAATTTGGCTTCACCCC 461 31 578 Antisense
AACCAGTTCAATTCCAATCACAGCC 80 149 666 Antisense
CACCAACTCGTGAGCCATTCACTGA 542 201 758 Antisense
GACAGTGCGTGCTTCTGGAATTCAT 256 369 792 Antisense
TTCTCAATCGATGTTCCTTCTGGAT 74 691 820 Antisense
ACGTCATTCATCCACATTCGGTTAT 395 95 884 Antisense
GGACGTTTTGTGCCGAAGAGCCTTG 219 523 967 Antisense
Sequence Source Affymetrix Proprietary Database