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[184439_at]

Description C17B7.12 /REP_DB=WormBase Gene ID /WP=CE20516 /TR=Q9TXS4 /GB=AAD34650.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.6
(-1.7)
A 		5.7
(3)
A 		1.7
(-3)
A 		5.4
(2.6)
A 		4
B 1
(-3)
A 		2.2
(-1.2)
A 		5
(3)
A 		2.7
(-0.5)
A 		4
C 0.9
(-3)
A 		1.3
(-2.8)
A 		1.3
(-2.8)
A 		14.3
(3)
A 		13
avr 1.5
(-3) 		3.1
(-1.4) 		2.7
(-1.8) 		7.5
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 3.8
(1.6)
A 		2.2
(-1.1)
A 		3.6
(1.3)
A 		1.1
(-3)
A 		4.6
(3)
A 		1.2
(-2.8)
A 		4
B 1.9
(0.1)
A 		2.8
(2.7)
A 		1.3
(-1.6)
A 		2.9
(3)
A 		1.6
(-0.7)
A 		0.8
(-3)
A 		2
C 2.4
(1.7)
A 		1.1
(-2.4)
A 		0.9
(-3)
A 		1.2
(-2.1)
A 		1.1
(-2.4)
A 		2.8
(3)
A 		2
avr 2.7
(3) 		2
(-0.8) 		1.9
(-1.4) 		1.7
(-2.5) 		2.4
(1.4) 		1.6
(-3) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1
(1.5)
A 		1.2
(3)
A 		0.4
(-3)
A 		0.8
(0)
A 		1
B 0.3
(-3)
A 		0.5
(-1.7)
A 		1.2
(3)
A 		0.6
(-1)
A 		1
C 0.3
(-3)
A 		0.4
(-2.7)
A 		0.5
(-2.4)
A 		2.4
(3)
A 		2
avr 0.5
(-3) 		0.7
(-1.5) 		0.7
(-1.5) 		1.3
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.7
(-0.8)
A 		0.8
(-0.3)
A 		0.8
(-0.3)
A 		0.3
(-3)
A 		1.4
(3)
A 		0.3
(-3)
A 		1
B 0.7
(1)
A 		0.9
(3)
A 		0.3
(-3)
A 		0.8
(2)
A 		0.6
(-0)
A 		0.3
(-3)
A 		1
C 0.9
(3)
A 		0.3
(-2.1)
A 		0.2
(-3)
A 		0.2
(-3)
A 		0.4
(-1.3)
A 		0.9
(3)
A 		1
avr 0.8
(3) 		0.7
(1.5) 		0.4
(-3) 		0.4
(-3) 		0.8
(3) 		0.5
(-1.5) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184439_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15843
Sequence Type Exemplar sequence
Representative Public ID C17B7.12 NCBI
Target Description C17B7.12 /REP_DB=WormBase Gene ID /WP=CE20516 /TR=Q9TXS4 /GB=AAD34650.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071531, NM_071507
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C17B7.12 ENSEMBL cdna:known chromosome:CEL140:V:3353089:3353747:1 gene:C17B7.12 None
NM_071531 NCBI Caenorhabditis elegans C17B7.12 (C17B7.12) mRNA, complete cds. None
SNAP00000011239 ENSEMBL cdna:SNAP chromosome:CEL140:V:3284848:3285506:1 None
SNAP00000029744 ENSEMBL cdna:SNAP chromosome:CEL140:V:3353532:3354307:1 None
GENEFINDER00000011254 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3284848:3285506:1 None
SNAP00000011239 ENSEMBL cdna:SNAP chromosome:CEL140:V:3284848:3285506:1 None
NM_071507 NCBI Caenorhabditis elegans F35F10.5 (F35F10.5) mRNA, complete cds. None
F35F10.5 ENSEMBL cdna:known chromosome:CEL140:V:3284848:3286031:1 gene:F35F10.5 None
C17B7.12 ENSEMBL cdna:known chromosome:CEL140:V:3353089:3353747:1 gene:C17B7.12 None
NM_071531 NCBI Caenorhabditis elegans C17B7.12 (C17B7.12) mRNA, complete cds. None
GENEFINDER00000011254 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3284848:3285506:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3353088-3353747(+) 100.0 100.0
chrV:3284844-3285506(+) 93.53 93.53
Public Domain and Genome References
Gene Title

Ensembl F35F10.5
C17B7.12
Entrez Gene 182712 Entrez gene
185310 Entrez gene
SwissProt Q9TXS4 EMBL-EBI
Q9GYU3 EMBL-EBI
WormBase CE35242 Wormbase
CE09930 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99929 Hypothetical protein F35F10.5 [Caenorhabditis elegans] ref|NP_503908.1| F35F10.5 [Caenorhabditis elegans] 1.0E-115
blast AAD34650 Hypothetical protein C17B7.12 [Caenorhabditis elegans] ref|NP_503932.2| C17B7.12 [Caenorhabditis elegans] 1.0E-94
blast AAF99929 Hypothetical protein F35F10.5 [Caenorhabditis elegans] ref|NP_503908.1| F35F10.5 [Caenorhabditis elegans] 3.0E-94
blast AAD34650 Hypothetical protein C17B7.12 [Caenorhabditis elegans] ref|NP_503932.2| C17B7.12 [Caenorhabditis elegans] 7.0E-91
blast AAF99929 Hypothetical protein F35F10.5 [Caenorhabditis elegans] ref|NP_503908.1| F35F10.5 [Caenorhabditis elegans] 3.0E-90
Sequence
Target Sequence 
>C. ELEGANS:184439_AT
gatgtcttacttgtccataattttggcctttggactgcttgctgtggtttttggcgccga
gccaacttccgagaagtgtaaagaggaagaaaaactagtgcaacagtgcttgaagaatct
tcctcgcagttacaaattatcgaatacaggattgattctagaaaataaggagtacaaaga
tgaaagccaaaagtgtctcgatcaactgacctgtgatcgatctaagagcgccttcaaagt
tcaagcggtaacacaagaaattatggagaaatttggagagatagcctcctgcgcccatgt
aagttgtttttcttcggatatgttgtttaatgagtacgatatgtttagaagtttttgcac
aaaagttttatcgattttttttttgattgattttgttcagaacgcttatccaaaagtgaa
agaaatgtgtgccagaaaaacgaatgccagcaataaggactgctcgaactatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTCTTACTTGTCCATAATTTTG 195 409 15 Antisense
AATTTTGGCCTTTGGACTGCTTGCT 509 173 33 Antisense
ATCTTCCTCGCAGTTACAAATTATC 531 31 131 Antisense
TCCTGCGCCCATGTAAGTTGTTTTT 627 591 301 Antisense
GCCCATGTAAGTTGTTTTTCTTCGG 413 287 307 Antisense
TTTTCTTCGGATATGTTGTTTAATG 114 677 322 Antisense
ACGATATGTTTAGAAGTTTTTGCAC 493 91 350 Antisense
GTTTTTGCACAAAAGTTTTATCGAT 557 449 365 Antisense
TTGTTCAGAACGCTTATCCAAAAGT 85 673 407 Antisense
GCCAGAAAAACGAATGCCAGCAATA 247 281 445 Antisense
GCAATAAGGACTGCTCGAACTATGA 282 317 464 Antisense
Sequence Source Affymetrix Proprietary Database