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[184438_at]

Description T20D4.11 /REP_DB=WormBase Gene ID /WP=CE13800 /TR=P91464 /GB=AAB37586.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 09      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2861
1 2 3 4 range
A 49.7
(-3)
A 		328.3
(-2.3)
P 		433.6
(-2.1)
P 		2496
(3)
P 		2446
B 12.8
(-3)
A 		248.5
(-2.4)
P 		518
(-1.8)
P 		2499.9
(3)
P 		2487
C 17.9
(-3)
A 		316.7
(-2.4)
P 		451.5
(-2.1)
P 		2873.5
(3)
P 		2856
avr 26.8
(-3) 		297.8
(-2.4) 		467.7
(-2) 		2623.1
(3) 		2596

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1217
1 2 3 4 5 6 range
A 3.4
(-3)
A 		198.6
(-2)
P 		1035.9
(2.1)
P 		1220
(3)
P 		574.6
(-0.2)
P 		168.3
(-2.2)
P 		1217
B 17.9
(-3)
A 		221
(-1.7)
P 		627.2
(0.9)
P 		951.8
(3)
P 		662.6
(1.1)
P 		213.2
(-1.7)
P 		934
C 4.7
(-3)
A 		267.5
(-1.6)
P 		521.8
(-0.3)
P 		1154
(3)
P 		501.8
(-0.4)
P 		155.8
(-2.2)
P 		1149
avr 8.7
(-3) 		229
(-1.8) 		728.3
(0.9) 		1108.6
(3) 		579.7
(0.1) 		179.1
(-2.1) 		1100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 529
1 2 3 4 range
A 18.1
(-3)
A 		71.3
(-2.1)
P 		113.3
(-1.4)
P 		365.4
(3)
P 		347
B 4.1
(-3)
A 		61.4
(-2.3)
P 		120
(-1.7)
P 		532.7
(3)
P 		529
C 5.9
(-3)
A 		91.1
(-1.9)
P 		157.4
(-1.1)
P 		484.5
(3)
P 		479
avr 9.4
(-3) 		74.6
(-2.1) 		130.2
(-1.4) 		460.9
(3) 		452

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 0.6
(-3)
A 		70.6
(-1.6)
P 		225.6
(1.4)
P 		309.4
(3)
P 		173.4
(0.4)
P 		41
(-2.2)
P 		309
B 6.2
(-3)
A 		73.6
(-1.5)
P 		152.3
(0.3)
P 		252.1
(2.6)
P 		269.2
(3)
P 		79.5
(-1.3)
P 		263
C 1.7
(-3)
A 		81.6
(-0.9)
P 		132.8
(0.4)
P 		232.1
(3)
P 		162.4
(1.2)
P 		52.2
(-1.7)
P 		230
avr 2.8
(-3) 		75.3
(-1.3) 		170.2
(0.8) 		264.5
(3) 		201.7
(1.6) 		57.6
(-1.7) 		262
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184438_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14811
Sequence Type Exemplar sequence
Representative Public ID T20D4.11 NCBI
Target Description T20D4.11 /REP_DB=WormBase Gene ID /WP=CE13800 /TR=P91464 /GB=AAB37586.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071549(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071549 NCBI Caenorhabditis elegans T20D4.11 (T20D4.11) mRNA, complete cds. 11/11 None
SNAP00000008845 ENSEMBL cdna:SNAP chromosome:CEL140:V:3398519:3399215:1 11/11 None
GENEFINDER00000008864 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3398519:3399215:1 11/11 None
T20D4.11 ENSEMBL cdna:known chromosome:CEL140:V:3398519:3399215:1 gene:T20D4.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3398518-3399215(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T20D4.11
Entrez Gene 188647 Entrez gene
SwissProt P91464 EMBL-EBI
WormBase CE13800 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37586 Hypothetical protein T20D4.11 [Caenorhabditis elegans] ref|NP_503950.1| T20D4.11 [Caenorhabditis elegans] 1.0E-109
blast NP_503900 T28A11.19 [Caenorhabditis elegans] gb|AAC48127.1| Hypothetical protein T28A11.19 [Caenorhabditis elegans] 5.0E-97
blast NP_503895 T28A11.16 [Caenorhabditis elegans] gb|AAC48125.1| Hypothetical protein T28A11.16 [Caenorhabditis elegans] 4.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 7.4E-73
Sequence
Target Sequence 
>C. ELEGANS:184438_AT
tttttcaaacttgctctgctcgcatcagtcctacttgcactcgcttatggggatgatgga
tacaatgaagcaagtgagttggagagaagaagaattagagattgcccagaagtcactttt
aaaagaatggccggttgcgtttgggaatttggaggatttttgaaaaaagtactttttctg
gatttagagcagaggactctggataaatttagaaaatcgtgcgtttcaatggctacatgt
ttcgatcttatcgagtgtaaagaaactggcaaattttcaagaggcaaaagaatcaaggac
tcttgtgatgtcatgaactacttatccaaaaatttcgttccctgtcttagaagattggaa
aaattgaatccagcacctacgtgcttcaagaagtggaaaccattttatgatttgaatgaa
gttggacctgacacaaccccagaggaaatggaggaattgtgcaaaaatatgcttggaaaa
gacaattgcatgaaggatctagtcggcagaacttgtggaggagccatgtcgcaagagttg
gtcgatcgttttgaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTCAAACTTGCTCTGCTCGCAT 125 675 22 Antisense
TGCACTCGCTTATGGGGATGATGGA 700 577 57 Antisense
TAGAGATTGCCCAGAAGTCACTTTT 482 651 117 Antisense
GGTTGCGTTTGGGAATTTGGAGGAT 699 505 154 Antisense
AAATCGTGCGTTTCAATGGCTACAT 563 117 235 Antisense
ATGGCTACATGTTTCGATCTTATCG 440 53 250 Antisense
TATCCAAAAATTTCGTTCCCTGTCT 34 653 344 Antisense
ATTTCGTTCCCTGTCTTAGAAGATT 448 13 353 Antisense
GAATCCAGCACCTACGTGCTTCAAG 202 331 387 Antisense
GGATCTAGTCGGCAGAACTTGTGGA 496 511 516 Antisense
AAGAGTTGGTCGATCGTTTTGAAGA 107 135 554 Antisense
Sequence Source Affymetrix Proprietary Database