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[184437_at]

Description C46H11.6 /REP_DB=WormBase Gene ID /WP=CE08788 /TR=Q9GYJ7 /GB=AAF99885.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 51      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 45.5
(-2.1)
A 		48.8
(-1.2)
A 		63.9
(3)
A 		42.4
(-3)
A 		22
B 45.9
(1.4)
A 		52.2
(2.1)
A 		59.9
(3)
P 		7.5
(-3)
A 		52
C 44.7
(-1.8)
A 		80.2
(3)
A 		35.4
(-3)
A 		62.6
(0.6)
A 		45
avr 45.4
(-0.9) 		60.4
(3) 		53.1
(1.1) 		37.5
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 37.9
(-1.9)
A 		41.8
(-1.3)
A 		62.1
(1.6)
A 		52.7
(0.2)
A 		30.3
(-3)
A 		72
(3)
A 		42
B 47
(-2.3)
A 		40.2
(-3)
A 		47
(-2.3)
A 		41.5
(-2.9)
A 		44.8
(-2.5)
A 		99.6
(3)
P 		59
C 54.5
(0.5)
A 		73.3
(1.9)
P 		54.7
(0.5)
A 		8.2
(-3)
A 		59
(0.8)
A 		87.6
(3)
P 		79
avr 46.5
(-1.6) 		51.8
(-1) 		54.6
(-0.6) 		34.1
(-3) 		44.7
(-1.8) 		86.4
(3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 16.5
(2.9)
A 		10.6
(-0.5)
A 		16.7
(3)
A 		6.2
(-3)
A 		11
B 14.6
(3)
A 		12.9
(2.2)
A 		13.9
(2.7)
P 		1.6
(-3)
A 		13
C 14.8
(-1)
A 		23
(3)
A 		12.3
(-2.2)
A 		10.6
(-3)
A 		12
avr 15.3
(2.9) 		15.5
(3) 		14.3
(2.2) 		6.1
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 7
(-3)
A 		14.8
(1.5)
A 		13.5
(0.7)
A 		13.4
(0.7)
A 		9.1
(-1.8)
A 		17.5
(3)
A 		11
B 16.4
(-1.8)
A 		13.4
(-2.5)
A 		11.4
(-2.9)
A 		11
(-3)
A 		18.2
(-1.4)
A 		37.2
(3)
P 		26
C 20.2
(1)
A 		22.4
(1.5)
P 		13.9
(-0.3)
A 		1.7
(-3)
A 		19.1
(0.8)
A 		29.3
(3)
P 		28
avr 14.5
(-1.2) 		16.9
(-0.5) 		12.9
(-1.7) 		8.7
(-3) 		15.5
(-0.9) 		28
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184437_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1196
Sequence Type Exemplar sequence
Representative Public ID C46H11.6 NCBI
Target Description C46H11.6 /REP_DB=WormBase Gene ID /WP=CE08788 /TR=Q9GYJ7 /GB=AAF99885.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059101(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059101 NCBI Caenorhabditis elegans C46H11.6 (C46H11.6) mRNA, complete cds. 11/11 None
GENEFINDER00000043159 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5020964:5023166:1 11/11 None
SNAP00000043102 ENSEMBL cdna:SNAP chromosome:CEL140:I:5022089:5023166:1 11/11 None
C46H11.6 ENSEMBL cdna:known chromosome:CEL140:I:5020877:5023166:1 gene:C46H11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5020876-5023166(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46H11.6
Entrez Gene 183523 Entrez gene
SwissProt Q9GYJ7 EMBL-EBI
WormBase CE08788 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99885 Hypothetical protein C46H11.6 [Caenorhabditis elegans] ref|NP_491502.1| C46H11.6 [Caenorhabditis elegans] 1.0E-165
blast AAF99885 Hypothetical protein C46H11.6 [Caenorhabditis elegans] ref|NP_491502.1| C46H11.6 [Caenorhabditis elegans] 1.0E-155
blast AAF99885 Hypothetical protein C46H11.6 [Caenorhabditis elegans] ref|NP_491502.1| C46H11.6 [Caenorhabditis elegans] 6.0E-92
blast CAE64422 Hypothetical protein CBG09116 [Caenorhabditis briggsae] 2.0E-69
blast CAE64422 Hypothetical protein CBG09116 [Caenorhabditis briggsae] 9.0E-64
blast NP_500590 F28E10.4 [Caenorhabditis elegans] gb|AAA81502.1| Hypothetical protein F28E10.4 [Caenorhabditis elegans] 6.0E-53
Sequence
Target Sequence 
>C. ELEGANS:184437_AT
gtgcaacggttggagttacagtgacatatattcaaaaacgtggcatagtaactcgaatcg
agcccagctcactcgcttcgatattctttggtcgtggggatctgataatggatataaatg
aagaatccattctgaacgcagagaaaaatgacgacttcattcgtgagaaactgtcgggaa
ttttgaaaggagaaaaagtcacatttttggttgaaagaccggtttctgtggaatctgcaa
acactcttcgtcatttgattgagtcagttgctccagatccagatgttaagatggcaaacg
acgcgatatgtattggtcggaatgcaagcaacatgcactataacgttctgaaaaagttgc
aaccaaaaagcattttaagtcgggatgtcttcaaagggaaaaatcctcgtgaaaagaaac
ctggcaagaagttgagtaaagaaaaggataacacaataaaaatatcgactgcaacatcca
cggcaaacatttcaacggatgtggctgaagatgaaatcgataatttgaaaaacgttgtta
ccaagagtcatgcagttagatcgggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCAACGGTTGGAGTTACAGTGAC 442 479 437 Antisense
TAACTCGAATCGAGCCCAGCTCACT 277 639 485 Antisense
AGCTCACTCGCTTCGATATTCTTTG 614 79 502 Antisense
TATTCTTTGGTCGTGGGGATCTGAT 620 661 518 Antisense
AAGACCGGTTTCTGTGGAATCTGCA 681 151 651 Antisense
ATCTGCAAACACTCTTCGTCATTTG 709 33 669 Antisense
GATTGAGTCAGTTGCTCCAGATCCA 320 435 693 Antisense
AGCAACATGCACTATAACGTTCTGA 183 77 763 Antisense
AAATATCGACTGCAACATCCACGGC 255 115 896 Antisense
ACATCCACGGCAAACATTTCAACGG 324 107 910 Antisense
AAGAGTCATGCAGTTAGATCGGGTG 257 155 979 Antisense
Sequence Source Affymetrix Proprietary Database