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[184436_at]

Description F58E1.12 /REP_DB=WormBase Gene ID /WP=CE11394 /TR=Q9TZG0 /GB=AAC67485.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 27      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 7.6
(-3)
A 		17.8
(-2.1)
A 		19.1
(-2)
A 		74.7
(3)
A 		67
B 42.3
(-0.3)
A 		83.5
(3)
A 		8.8
(-3)
A 		33.1
(-1)
A 		75
C 9.6
(-3)
A 		24.5
(-1.7)
A 		24.8
(-1.7)
A 		77.2
(3)
A 		68
avr 19.8
(-2.7) 		41.9
(0.3) 		17.6
(-3) 		61.7
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 42.7
(1.9)
A 		26.2
(-0.2)
A 		10.7
(-2.2)
A 		17.3
(-1.3)
A 		4.4
(-3)
A 		51.3
(3)
A 		47
B 46.7
(2.1)
A 		8.9
(-3)
A 		41.9
(1.4)
A 		9.1
(-3)
A 		27.9
(-0.5)
A 		53.7
(3)
A 		45
C 13.7
(-2.4)
A 		45.8
(2)
A 		9.7
(-3)
A 		24.6
(-0.9)
A 		22.1
(-1.3)
A 		53.2
(3)
P 		44
avr 34.4
(-0.1) 		27
(-1.3) 		20.8
(-2.4) 		17
(-3) 		18.1
(-2.8) 		52.7
(3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 2.8
(-3)
A 		3.9
(-2.2)
A 		5
(-1.4)
A 		10.9
(3)
A 		8
B 13.5
(0.7)
A 		20.6
(3)
A 		2
(-3)
A 		7
(-1.4)
A 		19
C 3.2
(-3)
A 		7.1
(-0.6)
A 		8.6
(0.3)
A 		13
(3)
A 		10
avr 6.5
(-1.5) 		10.5
(3) 		5.2
(-3) 		10.3
(2.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 7.9
(0.5)
A 		9.3
(1.3)
A 		2.3
(-2.5)
A 		4.4
(-1.3)
A 		1.3
(-3)
A 		12.5
(3)
A 		11
B 16.2
(1.7)
A 		3
(-2.8)
A 		10.2
(-0.3)
A 		2.4
(-3)
A 		11.3
(0)
A 		20
(3)
A 		18
C 5.1
(-2)
A 		14
(1.5)
A 		2.5
(-3)
A 		5
(-2)
A 		7.1
(-1.2)
A 		17.8
(3)
P 		15
avr 9.7
(-0.3) 		8.8
(-0.7) 		5
(-2.5) 		3.9
(-3) 		6.6
(-1.7) 		16.8
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184436_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4115
Sequence Type Exemplar sequence
Representative Public ID F58E1.12 NCBI
Target Description F58E1.12 /REP_DB=WormBase Gene ID /WP=CE11394 /TR=Q9TZG0 /GB=AAC67485.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061644(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061644 NCBI Caenorhabditis elegans F58E1.12 (F58E1.12) mRNA, complete cds. 11/11 None
SNAP00000040831 ENSEMBL cdna:SNAP chromosome:CEL140:II:1693299:1695851:-1 11/11 None
GENEFINDER00000040840 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1693299:1695851:-1 11/11 None
F58E1.12 ENSEMBL cdna:known chromosome:CEL140:II:1693299:1694618:-1 gene:F58E1.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1693297-1694617(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58E1.12
Entrez Gene 186516 Entrez gene
SwissProt Q9TZG0 EMBL-EBI
WormBase CE11394 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67485 Hypothetical protein F58E1.12 [Caenorhabditis elegans] ref|NP_494045.1| F58E1.12 [Caenorhabditis elegans] 0.0
blast AAB66198 Hypothetical protein K09F6.8 [Caenorhabditis elegans] ref|NP_494228.1| K09F6.8 [Caenorhabditis elegans] 4.0E-95
blast AAB66198 Hypothetical protein K09F6.8 [Caenorhabditis elegans] ref|NP_494228.1| K09F6.8 [Caenorhabditis elegans] 6.0E-95
blast AAB66198 Hypothetical protein K09F6.8 [Caenorhabditis elegans] ref|NP_494228.1| K09F6.8 [Caenorhabditis elegans] 7.0E-95
blast AAC67476 Hypothetical protein F58E1.13 [Caenorhabditis elegans] ref|NP_494046.2| F58E1.13 [Caenorhabditis elegans] 3.0E-46
blast AAB66237 Hypothetical protein R07C3.7 [Caenorhabditis elegans] ref|NP_493850.1| R07C3.7 [Caenorhabditis elegans] 2.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 2.7E-5
Sequence
Target Sequence 
>C. ELEGANS:184436_AT
gacgcgatcaattaccttgctaggtcactgttgggtggtcggaagaatattaaaatcaga
aagctttttctaagttgtgttggaactatccgcatacctgcgaacctcgatcttcaattc
aaacatctagaagttcgaggagtaaacactgataaaattgtgaaagccttccaaccactc
attgagaacctgaaggatccactggatatctttgagattattgataaagactttgcacag
ctcacaggccccatttatcaatctgcacgtctactggtgttcaatggcacataccaacct
tatcagcttgctgataaaagaaacatccgctttacaagcgccttaggcattatggaagag
tatttaggcctttatttggattattgggtcaataatcggaaggaagtcggtacgtgctgg
acgttcgagctggatcaggaatcggaagcaagagtgttcctgggagttataaagaaagat
ggtcgtgctgaacaatgtgaagagtcgagcgtcacatttccgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCGATCAATTACCTTGCTAGGT 517 381 604 Antisense
GCTAGGTCACTGTTGGGTGGTCGGA 617 299 622 Antisense
GGAACTATCCGCATACCTGCGAACC 137 529 685 Antisense
GCCTTCCAACCACTCATTGAGAACC 618 281 769 Antisense
TAAAGACTTTGCACAGCTCACAGGC 99 641 828 Antisense
CACAGGCCCCATTTATCAATCTGCA 625 195 846 Antisense
CAATCTGCACGTCTACTGGTGTTCA 402 181 862 Antisense
GCACATACCAACCTTATCAGCTTGC 191 317 890 Antisense
GAAACATCCGCTTTACAAGCGCCTT 342 355 923 Antisense
GTCGGTACGTGCTGGACGTTCGAGC 664 469 1009 Antisense
AAGAGTCGAGCGTCACATTTCCGAT 235 153 1103 Antisense
Sequence Source Affymetrix Proprietary Database