[Home] | [Total List]

[184435_at]

Description Y71A12B.8 /REP_DB=WormBase Gene ID /WP=CE24589 /TR=Q9NEN9 /GB=CAB81993.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 8.8
(-3)
A 		9.9
(-2.9)
A 		10.9
(-2.8)
A 		80.3
(3)
A 		72
B 3
(-3)
A 		10.1
(-2.2)
A 		11.5
(-2.1)
A 		56.8
(3)
A 		54
C 8.6
(-3)
A 		13.5
(-2.7)
A 		8
(-3)
A 		122.3
(3)
P 		114
avr 6.8
(-3) 		11.2
(-2.7) 		10.1
(-2.8) 		86.5
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 11.4
(-2.1)
A 		5.2
(-3)
A 		31
(0.9)
A 		7.2
(-2.7)
A 		7
(-2.7)
A 		45
(3)
A 		40
B 2.1
(-3)
A 		6
(2.7)
A 		6.2
(3)
A 		5
(1.2)
A 		5
(1.2)
A 		4.6
(0.7)
A 		4
C 6.1
(-1.5)
A 		11.9
(0.5)
A 		8.7
(-0.6)
A 		4.3
(-2.1)
A 		1.5
(-3)
A 		19.5
(3)
A 		18
avr 6.5
(-2.4) 		7.7
(-2) 		15.3
(0.5) 		5.5
(-2.7) 		4.5
(-3) 		23
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 3.2
(-2.4)
A 		2.2
(-3)
A 		2.9
(-2.6)
A 		11.8
(3)
A 		10
B 1
(-3)
A 		2.5
(-2.2)
A 		2.7
(-2.1)
A 		12.1
(3)
A 		11
C 2.8
(-3)
A 		3.9
(-2.6)
A 		2.8
(-3)
A 		20.6
(3)
P 		18
avr 2.3
(-3) 		2.9
(-2.7) 		2.8
(-2.8) 		14.8
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.1
(-2.8)
A 		1.9
(-2.9)
A 		6.7
(0.2)
A 		1.8
(-3)
A 		2.1
(-2.8)
A 		11
(3)
A 		9
B 0.7
(-3)
A 		2
(2.6)
A 		1.5
(0.4)
A 		1.3
(-0.4)
A 		2.1
(3)
A 		1.7
(1.3)
A 		1
C 2.2
(-1.3)
A 		3.6
(0.1)
A 		2.2
(-1.3)
A 		0.9
(-2.6)
A 		0.5
(-3)
A 		6.5
(3)
A 		6
avr 1.7
(-2.5) 		2.5
(-1.6) 		3.5
(-0.4) 		1.3
(-3) 		1.6
(-2.6) 		6.4
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184435_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2503
Sequence Type Exemplar sequence
Representative Public ID Y71A12B.8 NCBI
Target Description Y71A12B.8 /REP_DB=WormBase Gene ID /WP=CE24589 /TR=Q9NEN9 /GB=CAB81993.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061032(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061032 NCBI Caenorhabditis elegans Y71A12B.8 (Y71A12B.8) mRNA, complete cds. 11/11 None
GENEFINDER00000038389 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13946303:13949981:1 11/11 None
Y71A12B.8 ENSEMBL cdna:known chromosome:CEL140:I:13946303:13949981:1 gene:Y71A12B.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038368 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13946233-13949912(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71A12B.8
Entrez Gene 190578 Entrez gene
SwissProt Q9NEN9 EMBL-EBI
WormBase CE24589 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB81993 Hypothetical protein Y71A12B.8 [Caenorhabditis elegans] ref|NP_493433.1| Y71A12B.8 [Caenorhabditis elegans] 0.0
blast CAB02979 Hypothetical protein F23A7.6 [Caenorhabditis elegans] ref|NP_510645.1| F23A7.6 [Caenorhabditis elegans] 2.0E-16
blast AAK26159 Hypothetical protein Y82E9BR.17a [Caenorhabditis elegans] ref|NP_001022962.1| Y82E9BR.17a [Caenorhabditis elegans] 3.0E-10
Sequence
Target Sequence 
>C. ELEGANS:184435_AT
tttcgacgtattcacccatatctgaacaaacttctaccagcatttgaatgtgatgctttt
tggaagaagacgatatctaaattcattgattgtttagagacactttacaagtacgatatg
aagcttcttgcaatgacggttagcagttgtggtgaagatgttgaaatggttcatagtggg
aaggaagatgaacaatcagatgaggtcgatttggaaaacattgccgagcacatcttccta
ctgactgaacgttatgaccagatacgacctaatttgaaggatcttctttttattctcaaa
tcgttcgactactatgaaaaatatacaacggatattatgaaggcttttgggaatctagga
aatgtgttccacacgccaattgctttgcatgtcctcaagtaccttgggaaaaacgttaaa
cgattcaagtacagtgtttcgaggtttgaaattcgtcagacaccgaaccaaaatggaaca
ccaaatcagaaaagttcgcttgctgttggccaaactccaacatcttgtgatcaatgtcaa
tttaaatcactcaacatcaacacgttgaacactcattttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCGACGTATTCACCCATATCTGA 256 669 844 Antisense
AAACATTGCCGAGCACATCTTCCTA 574 127 1059 Antisense
ACATCTTCCTACTGACTGAACGTTA 554 103 1073 Antisense
ACGTTATGACCAGATACGACCTAAT 205 93 1092 Antisense
GAAATGTGTTCCACACGCCAATTGC 516 361 1202 Antisense
ACACGCCAATTGCTTTGCATGTCCT 604 109 1214 Antisense
TGCATGTCCTCAAGTACCTTGGGAA 524 577 1229 Antisense
GAAATTCGTCAGACACCGAACCAAA 148 363 1291 Antisense
AGAAAAGTTCGCTTGCTGTTGGCCA 243 73 1331 Antisense
GGCCAAACTCCAACATCTTGTGATC 658 543 1351 Antisense
ATCAACACGTTGAACACTCATTTTT 553 27 1399 Antisense
Sequence Source Affymetrix Proprietary Database