[Home] | [Total List]

[184434_at]

Description Y60A3A.16 /REP_DB=WormBase Gene ID /WP=CE24522 /TR=Q9U1Z0 /GB=CAB60401.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 0      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 15
(-3)
A 		35.4
(0.8)
A 		47.2
(3)
A 		31.9
(0.1)
A 		32
B 50.2
(3)
M 		11.8
(-2.5)
A 		8.4
(-3)
A 		13.6
(-2.3)
A 		42
C 13.7
(-3)
A 		27.7
(-0.6)
A 		36.9
(1)
P 		48.2
(3)
P 		35
avr 26.3
(-1.7) 		25
(-3) 		30.8
(2.6) 		31.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 7.8
(-3)
A 		35.5
(-1.5)
A 		120.3
(3)
P 		37.1
(-1.4)
A 		41.5
(-1.2)
M 		41.5
(-1.2)
M 		113
B 4.1
(-3)
A 		54.6
(0.7)
P 		79.4
(2.4)
P 		87.1
(3)
P 		48.6
(0.2)
P 		35.1
(-0.8)
P 		83
C 36.8
(-2.9)
A 		84.9
(3)
P 		54.2
(-0.7)
A 		74.8
(1.8)
P 		42.9
(-2.1)
A 		35.6
(-3)
A 		49
avr 16.2
(-3) 		58.3
(0.7) 		84.6
(3) 		66.3
(1.4) 		44.3
(-0.5) 		37.4
(-1.1) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 5.5
(-2.4)
A 		7.7
(-0.6)
A 		12.3
(3)
A 		4.7
(-3)
A 		8
B 16
(3)
M 		2.9
(-2.6)
A 		1.9
(-3)
A 		2.9
(-2.6)
A 		14
C 4.5
(-3)
A 		8
(-0.5)
A 		12.9
(3)
P 		8.1
(-0.4)
P 		8
avr 8.7
(2.5) 		6.2
(-1.4) 		9
(3) 		5.2
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 1.4
(-3)
A 		12.6
(-0.3)
A 		26.2
(3)
P 		9.4
(-1.1)
A 		12.5
(-0.3)
M 		10.1
(-0.9)
M 		25
B 1.4
(-3)
A 		18.2
(1.6)
P 		19.3
(1.9)
P 		23.1
(3)
P 		19.8
(2.1)
P 		13.1
(0.2)
P 		22
C 13.6
(-2.3)
A 		25.9
(3)
P 		13.8
(-2.2)
A 		15
(-1.7)
P 		13.9
(-2.1)
A 		11.9
(-3)
A 		14
avr 5.5
(-3) 		18.9
(2.6) 		19.8
(3) 		15.8
(1.3) 		15.4
(1.2) 		11.7
(-0.4) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184434_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13398
Sequence Type Exemplar sequence
Representative Public ID Y60A3A.16 NCBI
Target Description Y60A3A.16 /REP_DB=WormBase Gene ID /WP=CE24522 /TR=Q9U1Z0 /GB=CAB60401.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075455(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075455 NCBI Caenorhabditis elegans Y60A3A.16 (Y60A3A.16) mRNA, complete cds. 11/11 None
Y60A3A.16 ENSEMBL cdna:known chromosome:CEL140:V:19919666:19920591:-1 gene:Y60A3A.16 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032795 5/11 Cross Hyb Matching Probes None
GENEFINDER00000032825 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19919665-19920591(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y60A3A.16
Entrez Gene 190438 Entrez gene
SwissProt Q9U1Z0 EMBL-EBI
WormBase CE24522 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60401 Hypothetical protein Y60A3A.16 [Caenorhabditis elegans] ref|NP_507856.1| Y60A3A.16 [Caenorhabditis elegans] 1.0E-123
blast CAB05490 Hypothetical protein F14H3.12 [Caenorhabditis elegans] ref|NP_507047.2| F14H3.12 [Caenorhabditis elegans] 5.0E-70
blast CAE61017 Hypothetical protein CBG04756 [Caenorhabditis briggsae] 7.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR001772 EMBL-EBI Kinase-associated, C-terminal 3.5E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507856.1 2 156-175,207-229
Y60A3A.16 2 156-175,207-229
Sequence
Target Sequence 
>C. ELEGANS:184434_AT
gactgatcaggaagatatgccgagagcagtgaggttcacttggaacctgaagaaaacttc
aatgctggaaccggatgagattttgaaagaaattcaaaaagtacttggaagctatggcat
tgattatgaacaacaaaaacgattcttgctccgctgtagccatgtggatcctctcactga
tgcgtcagtaaagtgggaaatcgaggtctgcacactaccacgcttatatttgaatggtgt
gcattttcaacgcatttcgggaagctcgagcgactttaagaatatcatcacaaaaatatc
agaagaagatacctttgctcttgaagctcaaaaaaccagaaaaaataaggagtcactaat
acttaaagtgctcgttctagatcctctcgcaattattttactgcttcctcactaccgtaa
caaactttttggtattgctaagaagcataagatatttcccatttttcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTGATCAGGAAGATATGCCGAGA 709 373 123 Antisense
TATGCCGAGAGCAGTGAGGTTCACT 524 657 138 Antisense
AAACTTCAATGCTGGAACCGGATGA 102 127 176 Antisense
AAGTACTTGGAAGCTATGGCATTGA 512 157 221 Antisense
ACAAAAACGATTCTTGCTCCGCTGT 229 111 255 Antisense
TTGAATGGTGTGCATTTTCAACGCA 101 705 352 Antisense
AGCTCGAGCGACTTTAAGAATATCA 118 81 385 Antisense
GAAGATACCTTTGCTCTTGAAGCTC 278 337 427 Antisense
TTAAAGTGCTCGTTCTAGATCCTCT 596 683 485 Antisense
GTTCTAGATCCTCTCGCAATTATTT 699 443 496 Antisense
GCATAAGATATTTCCCATTTTTCCT 412 303 567 Antisense
Sequence Source Affymetrix Proprietary Database