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[184432_at]

Description Y59A8B.12 /REP_DB=WormBase Gene ID /WP=CE24505 /TR=Q9NEQ5 /GB=CAB60960.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 420
1 2 3 4 range
A 55.6
(-3)
A 		79.8
(-2.5)
A 		145.5
(-1.2)
P 		350.9
(3)
P 		295
B 75.9
(-3)
A 		106.6
(-2.5)
A 		101.6
(-2.6)
A 		470.8
(3)
P 		395
C 51.1
(-3)
A 		100.5
(-2.1)
A 		149.1
(-1.3)
M 		396.1
(3)
P 		345
avr 60.9
(-3) 		95.6
(-2.4) 		132.1
(-1.8) 		405.9
(3) 		345

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 938
1 2 3 4 5 6 range
A 138.6
(-2.3)
A 		49.8
(-3)
A 		106.8
(-2.6)
P 		215.9
(-1.7)
P 		748.7
(2.4)
P 		833.3
(3)
P 		784
B 120.8
(-2.7)
A 		72.4
(-3)
A 		100.9
(-2.8)
P 		246.9
(-1.8)
P 		845.3
(2.5)
P 		911.6
(3)
P 		839
C 89.3
(-3)
A 		112.4
(-2.8)
M 		107.8
(-2.9)
P 		329
(-1.4)
P 		670
(0.9)
P 		987.3
(3)
P 		898
avr 116.2
(-2.7) 		78.2
(-3) 		105.2
(-2.8) 		263.9
(-1.7) 		754.7
(1.9) 		910.7
(3) 		833
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 20.2
(-2.5)
A 		17.3
(-3)
A 		38
(0.6)
P 		51.4
(3)
P 		34
B 24.2
(-3)
A 		26.3
(-2.8)
A 		23.6
(-3)
A 		100.3
(3)
P 		77
C 16.9
(-3)
A 		28.9
(-1.6)
A 		52
(1.2)
M 		66.8
(3)
P 		50
avr 20.4
(-3) 		24.2
(-2.6) 		37.9
(-1) 		72.8
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 326
1 2 3 4 5 6 range
A 25.5
(-2.8)
A 		17.7
(-3)
A 		23.3
(-2.8)
P 		54.8
(-1.9)
P 		225.9
(3)
P 		202.9
(2.3)
P 		208
B 42
(-2.7)
A 		24.1
(-3)
A 		24.5
(-3)
P 		65.4
(-2.2)
P 		343.4
(3)
P 		339.9
(2.9)
P 		319
C 33.1
(-2.9)
A 		34.3
(-2.9)
M 		27.4
(-3)
P 		66.2
(-2.2)
P 		216.8
(0.7)
P 		330.5
(3)
P 		303
avr 33.5
(-2.8) 		25.4
(-3) 		25.1
(-3) 		62.1
(-2.2) 		262
(2.3) 		291.1
(3) 		266
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184432_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13389
Sequence Type Exemplar sequence
Representative Public ID Y59A8B.12 NCBI
Target Description Y59A8B.12 /REP_DB=WormBase Gene ID /WP=CE24505 /TR=Q9NEQ5 /GB=CAB60960.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075130(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075130 NCBI Caenorhabditis elegans Y59A8B.12 (Y59A8B.12) mRNA, complete cds. 11/11 None
SNAP00000028707 ENSEMBL cdna:SNAP chromosome:CEL140:V:18088390:18088782:-1 10/11 None
GENEFINDER00000028731 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18088390:18088792:-1 11/11 None
Y59A8B.12 ENSEMBL cdna:known chromosome:CEL140:V:18088390:18088792:-1 gene:Y59A8B.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18088389-18088792(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y59A8B.12
Entrez Gene 190395 Entrez gene
SwissProt Q9NEQ5 EMBL-EBI
WormBase CE24505 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60960 Hypothetical protein Y59A8B.12 [Caenorhabditis elegans] ref|NP_507531.1| Y59A8B.12 [Caenorhabditis elegans] 8.0E-65
blast CAB60960 Hypothetical protein Y59A8B.12 [Caenorhabditis elegans] ref|NP_507531.1| Y59A8B.12 [Caenorhabditis elegans] 1.0E-37
Sequence
Target Sequence 
>C. ELEGANS:184432_AT
ggaccgaaacggctacatcatcaaccgaactcgatttgccgccgattttcacaacagaaa
tgaagatttatcggaatgggaagagatgcgaggcatcgaatgggatctcattcttcacag
cgacggaggccaactttacacacagctggtcactcgttctcggctacaatacgaaatccc
atgcaaattcctgctggaagctcaatatggacaagtaaaagtcggagaaaactttgatgt
gacagtttcttcacggaatcatacattcggaatgcgaattgaccaacctgctgacaatgg
agcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACCGAAACGGCTACATCATCAAC 582 521 36 Antisense
CATCAACCGAACTCGATTTGCCGCC 202 209 54 Antisense
TTTGCCGCCGATTTTCACAACAGAA 201 669 70 Antisense
GAATGGGATCTCATTCTTCACAGCG 349 333 133 Antisense
TCACAGCGACGGAGGCCAACTTTAC 369 621 150 Antisense
CAACTTTACACACAGCTGGTCACTC 419 189 166 Antisense
TCACTCGTTCTCGGCTACAATACGA 121 627 185 Antisense
GAAATCCCATGCAAATTCCTGCTGG 441 361 208 Antisense
GACAGTTTCTTCACGGAATCATACA 619 367 276 Antisense
GGAATGCGAATTGACCAACCTGCTG 142 533 304 Antisense
TGACCAACCTGCTGACAATGGAGCC 224 569 315 Antisense
Sequence Source Affymetrix Proprietary Database