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[184431_at]

Description C18A11.3 /REP_DB=WormBase Gene ID /WP=CE04034 /TR=Q18068 /GB=AAC69007.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 12      4grp_highest_8_8 > 32      4grp_high_8_8 > 50      6grp_highest_nonorm > 31      6grp_total > 23      4grp_total > 61      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1347
1 2 3 4 range
A 1251.9
(3)
P 		1045.9
(1.9)
P 		1033.5
(1.8)
P 		156
(-3)
P 		1096
B 1254.4
(3)
P 		1050.5
(1.9)
P 		973.8
(1.5)
P 		117.2
(-3)
P 		1137
C 1463.7
(3)
P 		1139.1
(1.5)
P 		931.9
(0.5)
P 		175
(-3)
P 		1289
avr 1323.3
(3) 		1078.5
(1.7) 		979.7
(1.2) 		149.4
(-3) 		1174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1091
1 2 3 4 5 6 range
A 1370.2
(3)
P 		1083.8
(1.4)
P 		1019.8
(1)
P 		788.8
(-0.3)
P 		696
(-0.9)
P 		326.3
(-3)
P 		1044
B 1208.2
(1.8)
P 		1002.2
(0.7)
P 		1417.4
(3)
P 		810
(-0.4)
P 		678.8
(-1.1)
P 		336.5
(-3)
P 		1081
C 1245.5
(3)
P 		1066.1
(1.7)
P 		964.7
(1)
P 		872
(0.3)
P 		619.1
(-1.5)
P 		409.6
(-3)
P 		836
avr 1274.6
(3) 		1050.7
(1.5) 		1134
(2.1) 		823.6
(0) 		664.6
(-1) 		357.5
(-3) 		917
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 462
1 2 3 4 range
A 455.8
(3)
P 		227
(-0.2)
P 		270.2
(0.4)
P 		22.8
(-3)
P 		433
B 400
(3)
P 		259.5
(0.8)
P 		225.7
(0.2)
P 		25
(-3)
P 		375
C 484.5
(3)
P 		327.5
(0.9)
P 		324.8
(0.9)
P 		29.5
(-3)
P 		455
avr 446.8
(3) 		271.3
(0.5) 		273.6
(0.5) 		25.8
(-3) 		421

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 382
1 2 3 4 5 6 range
A 252.6
(0.4)
P 		385.5
(3)
P 		222.1
(-0.2)
P 		200.1
(-0.6)
P 		210
(-0.4)
P 		79.4
(-3)
P 		306
B 420.4
(3)
P 		333.6
(1.2)
P 		344.2
(1.4)
P 		214.6
(-1.2)
P 		275.8
(0.1)
P 		125.5
(-3)
P 		295
C 461.6
(3)
P 		325.3
(0.5)
P 		245.5
(-1)
P 		175.4
(-2.3)
P 		200.3
(-1.8)
P 		137.1
(-3)
P 		325
avr 378.2
(3) 		348.1
(2.3) 		270.6
(0.6) 		196.7
(-1.1) 		228.7
(-0.4) 		114
(-3) 		264
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184431_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16871
Sequence Type Exemplar sequence
Representative Public ID C18A11.3 NCBI
Target Description C18A11.3 /REP_DB=WormBase Gene ID /WP=CE04034 /TR=Q18068 /GB=AAC69007.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076955(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076955 NCBI Caenorhabditis elegans C18A11.3 (C18A11.3) mRNA, complete cds. 11/11 None
GENEFINDER00000023794 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8061070:8065533:1 10/11 None
C18A11.3 ENSEMBL cdna:known chromosome:CEL140:X:8058843:8065533:1 gene:C18A11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023790 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8058841-8065532(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18A11.3
Entrez Gene 181063 Entrez gene
SwissProt Q18068 EMBL-EBI
WormBase CE04034 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69007 Hypothetical protein C18A11.3 [Caenorhabditis elegans] ref|NP_509356.1| C18A11.3 [Caenorhabditis elegans] 1.0E-167
blast AAC69007 Hypothetical protein C18A11.3 [Caenorhabditis elegans] ref|NP_509356.1| C18A11.3 [Caenorhabditis elegans] 1.0E-137
blast CAE70344 Hypothetical protein CBG16891 [Caenorhabditis briggsae] 1.0E-123
blast CAE70344 Hypothetical protein CBG16891 [Caenorhabditis briggsae] 1.0E-111
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509356.1 2 21-43,81-103
C18A11.3 2 21-43,81-103
GENEFINDER00000023794 1 35-57
Sequence
Target Sequence 
>C. ELEGANS:184431_AT
ggagctgtgatttggtcttttgtacagggggaaactggaacaggtactcctgatattcat
catcgcgatgcatccaaaaatttttccattttcatcgaccagtattcccagaaagaaggg
ctctatatcacgacataccgacttccggaaggatcgagcgatgaagaaccaaaacaagaa
gaataccaatcattctggtttcaaagcgacactaataaaacactagcacatcaaatcact
cctacggtaacaatttatgcttttgagcatcatgcctactggtacgatacttctgcaaac
ccagcgaaatgcacattcgatcctaaaatgaactatttgacatacataagaaacctcgga
atgaccaatcttgaaagacatcattcggaatatgaggaaacacacaacggtgaaaaggtt
ttcgtgtatcaaggaaatccgaatgaagtgctgttaacaaacgtgaatcaaactgcattt
ttgataactgcttacgcagatgctaaaactggcgctcttctcgcctgggacacctacttc
acttctgaaacggatagcacaaaaccagacccttcttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCTGTGATTTGGTCTTTTGTAC 676 521 298 Antisense
GGTACTCCTGATATTCATCATCGCG 301 505 340 Antisense
CATTTTCATCGACCAGTATTCCCAG 474 215 384 Antisense
AGAAGGGCTCTATATCACGACATAC 366 73 411 Antisense
ATCACGACATACCGACTTCCGGAAG 29 25 424 Antisense
TAGCACATCAAATCACTCCTACGGT 656 651 521 Antisense
TGAGCATCATGCCTACTGGTACGAT 104 569 561 Antisense
GGTACGATACTTCTGCAAACCCAGC 346 503 578 Antisense
GAAACCTCGGAATGACCAATCTTGA 402 357 647 Antisense
AGATGCTAAAACTGGCGCTCTTCTC 236 67 795 Antisense
TAGCACAAAACCAGACCCTTCTTAT 229 651 852 Antisense
Sequence Source Affymetrix Proprietary Database