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[184429_s_at]

Description K11H12.8 /REP_DB=WormBase Gene ID /WP=CE12160 /TR=P91373 /GB=AAC24402.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 22      4grp_high_8_8 > 14      6grp_highest_nonorm > 58      6grp_total > 87      4grp_total > 09      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1021
1 2 3 4 range
A 2190.7
(-3)
P 		2273.6
(-1.7)
P 		2234
(-2.3)
P 		2571.4
(3)
P 		381
B 2126.5
(-2.4)
P 		2038
(-3)
P 		2178.2
(-2)
P 		2900.4
(3)
P 		862
C 1981.9
(-3)
P 		2170.5
(-1.9)
P 		2184.9
(-1.8)
P 		3002.4
(3)
P 		1021
avr 2099.7
(-3) 		2160.7
(-2.5) 		2199
(-2.2) 		2824.7
(3) 		725

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1541
1 2 3 4 5 6 range
A 2666.2
(-0.1)
P 		2148
(-3)
P 		2563.5
(-0.7)
P 		2428.4
(-1.4)
P 		2888.4
(1.1)
P 		3223.6
(3)
P 		1076
B 2953.2
(-0.4)
P 		2395.9
(-3)
P 		2604.4
(-2)
P 		2783.9
(-1.2)
P 		2900.8
(-0.7)
P 		3689
(3)
P 		1293
C 2426.9
(-1.1)
P 		2177
(-3)
P 		2411.4
(-1.2)
P 		2519.9
(-0.4)
P 		2933.5
(2.7)
P 		2977.1
(3)
P 		800
avr 2682.1
(-0.5) 		2240.3
(-3) 		2526.4
(-1.4) 		2577.4
(-1.1) 		2907.6
(0.8) 		3296.6
(3) 		1056
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 421
1 2 3 4 range
A 797.6
(3)
P 		493.5
(-1.3)
P 		584
(-0)
P 		376.4
(-3)
P 		421
B 678.1
(3)
P 		503.3
(-3)
P 		504.7
(-3)
P 		618.1
(0.9)
P 		175
C 656.1
(0.5)
P 		624
(-0.2)
P 		761.5
(3)
P 		506.2
(-3)
P 		255
avr 710.6
(3) 		540.3
(-1.9) 		616.7
(0.3) 		500.2
(-3) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 884
1 2 3 4 5 6 range
A 491.5
(-3)
P 		763.9
(1.3)
P 		558.3
(-1.9)
P 		615.9
(-1)
P 		871.6
(3)
P 		784.8
(1.6)
P 		380
B 1027.6
(0.2)
P 		797.5
(-1.7)
P 		632.4
(-3)
P 		737.3
(-2.2)
P 		1178.6
(1.4)
P 		1375.6
(3)
P 		743
C 899.5
(1.8)
P 		664.3
(-1.1)
P 		613.7
(-1.7)
P 		506.7
(-3)
P 		949.2
(2.4)
P 		996.6
(3)
P 		490
avr 806.2
(-0.3) 		741.9
(-1.1) 		601.5
(-3) 		620
(-2.8) 		999.8
(2.3) 		1052.3
(3) 		451
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184429_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10394
Sequence Type Exemplar sequence
Representative Public ID K11H12.8 NCBI
Target Description K11H12.8 /REP_DB=WormBase Gene ID /WP=CE12160 /TR=P91373 /GB=AAC24402.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171248(11), NM_171249(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171248 NCBI Caenorhabditis elegans K11H12.8a (K11H12.8) mRNA, complete cds. 11/11 A 
NM_171249 NCBI Caenorhabditis elegans K11H12.8b (K11H12.8) mRNA, complete cds. 11/11 None
GENEFINDER00000015778 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:655415:658424:1 11/11 None
K11H12.8a ENSEMBL cdna:known chromosome:CEL140:IV:655384:658587:1 gene:K11H12.8 11/11 A 
K11H12.8b ENSEMBL cdna:known chromosome:CEL140:IV:655397:658595:1 gene:K11H12.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015762 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:655402-658430(+) 100.0 100.0
Public Domain and Genome References
Ensembl K11H12.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741296 K11H12.8a [Caenorhabditis elegans] gb|AAC24402.1| Hypothetical protein K11H12.8a [Caenorhabditis elegans] 0.0
blast CAE73733 Hypothetical protein CBG21259 [Caenorhabditis briggsae] 1.0E-119
blast AAF47994 CG2076-PA [Drosophila melanogaster] gb|AAQ22414.1| RH72958p [Drosophila melanogaster] ref|NP_572681.1| CG2076-PA [Drosophila melanogaster] 2.0E-80
blast NP_741297 K11H12.8b [Caenorhabditis elegans] gb|AAM98000.1| Hypothetical protein K11H12.8b [Caenorhabditis elegans] 5.0E-51
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741296.1 7 70-92,113-135,145-167,180-202,206-225,232-254,258-280
K11H12.8a 7 70-92,113-135,145-167,180-202,206-225,232-254,258-280
GENEFINDER00000015778 7 64-86,107-129,139-161,174-196,200-219,226-248,252-274
Sequence
Target Sequence 
>C. ELEGANS:184429_S_AT
cacctggatcagctctgggagccagtctcgcatcgattgtcgtctacggtggtctcatcc
tcttctcggccttccttctctatgatacgcagagactcgtcaaaaaggctgaaaatcacc
cacattcatctcaattgtacggttccgacatgcaaatccgctcatttgacccaatcaacg
cacaaatgtcaatctacatggatgtcctgaatatctttatgcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCTGGATCAGCTCTGGGAGCCAG 341 201 773 Antisense
TCTCGCATCGATTGTCGTCTACGGT 457 609 798 Antisense
TCGATTGTCGTCTACGGTGGTCTCA 265 603 805 Antisense
CCTTCCTTCTCTATGATACGCAGAG 49 271 842 Antisense
GAAAATCACCCACATTCATCTCAAT 655 353 883 Antisense
TTCATCTCAATTGTACGGTTCCGAC 452 685 897 Antisense
ACGGTTCCGACATGCAAATCCGCTC 455 95 911 Antisense
ATGCAAATCCGCTCATTTGACCCAA 147 43 922 Antisense
GCTCATTTGACCCAATCAACGCACA 135 301 932 Antisense
ACCCAATCAACGCACAAATGTCAAT 423 89 941 Antisense
GGATGTCCTGAATATCTTTATGCGA 236 515 972 Antisense
Sequence Source Affymetrix Proprietary Database