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[184428_at]

Description K11H12.8 /REP_DB=WormBase Gene ID /WP=CE12160 /TR=P91373 /GB=AAC24402.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 85      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 77      6grp_total > 76      4grp_total > 0      6grp_highest_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 351
1 2 3 4 range
A 1035
(1)
P 		926.9
(-3)
P 		1007.4
(-0)
P 		1088.3
(3)
P 		161
B 925.4
(-2.7)
P 		907.3
(-3)
P 		1031.1
(-0.8)
P 		1248.3
(3)
P 		341
C 974.1
(-1.5)
P 		897.1
(-3)
P 		964.4
(-1.7)
P 		1204.9
(3)
P 		308
avr 978.2
(-1.5) 		910.4
(-3) 		1001
(-1) 		1180.5
(3) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 733
1 2 3 4 5 6 range
A 1056.4
(-2.3)
P 		973.4
(-3)
P 		1244.7
(-0.8)
P 		1221.4
(-1)
P 		1251
(-0.7)
P 		1706
(3)
P 		733
B 1208.4
(-2.1)
P 		1131
(-3)
P 		1459.9
(0.9)
P 		1419.7
(0.5)
P 		1291.6
(-1.1)
P 		1630.8
(3)
P 		500
C 1138.6
(-2.1)
P 		1084.9
(-3)
P 		1237.8
(-0.5)
P 		1216.3
(-0.9)
P 		1277.6
(0.1)
P 		1454.1
(3)
P 		369
avr 1134.5
(-2.2) 		1063.1
(-3) 		1314.1
(-0.2) 		1285.8
(-0.5) 		1273.4
(-0.6) 		1597
(3) 		534
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 376.9
(3)
P 		201.2
(-1.8)
P 		263.3
(-0.1)
P 		159.3
(-3)
P 		218
B 295.1
(3)
P 		224.1
(-3)
P 		238.9
(-1.7)
P 		266
(0.5)
P 		71
C 322.5
(2.4)
P 		257.9
(-0.5)
P 		336.1
(3)
P 		203.2
(-3)
P 		133
avr 331.5
(3) 		227.7
(-2.1) 		279.4
(0.4) 		209.5
(-3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 413
1 2 3 4 5 6 range
A 194.7
(-3)
P 		346.2
(1.1)
P 		271.1
(-0.9)
P 		309.8
(0.1)
P 		377.5
(2)
P 		415.4
(3)
P 		221
B 420.5
(-1.4)
P 		376.5
(-2.5)
P 		354.5
(-3)
P 		376
(-2.5)
P 		524.7
(1)
P 		608.1
(3)
P 		254
C 422
(1.4)
P 		331
(-0.9)
P 		315.1
(-1.3)
P 		244.6
(-3)
P 		413.4
(1.2)
P 		486.8
(3)
P 		242
avr 345.7
(-1.9) 		351.2
(-1.7) 		313.6
(-2.9) 		310.1
(-3) 		438.5
(1) 		503.4
(3) 		193
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184428_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10394
Sequence Type Exemplar sequence
Representative Public ID K11H12.8 NCBI
Target Description K11H12.8 /REP_DB=WormBase Gene ID /WP=CE12160 /TR=P91373 /GB=AAC24402.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171248(11), NM_171249(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171248 NCBI Caenorhabditis elegans K11H12.8a (K11H12.8) mRNA, complete cds. 11/11 A 
NM_171249 NCBI Caenorhabditis elegans K11H12.8b (K11H12.8) mRNA, complete cds. 11/11 None
SNAP00000015762 ENSEMBL cdna:SNAP chromosome:CEL140:IV:655397:658022:1 11/11 None
GENEFINDER00000015778 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:655415:658424:1 11/11 None
K11H12.8a ENSEMBL cdna:known chromosome:CEL140:IV:655384:658587:1 gene:K11H12.8 11/11 A 
K11H12.8b ENSEMBL cdna:known chromosome:CEL140:IV:655397:658595:1 gene:K11H12.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:655402-658430(+) 100.0 100.0
Public Domain and Genome References
Ensembl K11H12.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741296 K11H12.8a [Caenorhabditis elegans] gb|AAC24402.1| Hypothetical protein K11H12.8a [Caenorhabditis elegans] 0.0
blast NP_741296 K11H12.8a [Caenorhabditis elegans] gb|AAC24402.1| Hypothetical protein K11H12.8a [Caenorhabditis elegans] 1.0E-168
blast CAE73733 Hypothetical protein CBG21259 [Caenorhabditis briggsae] 1.0E-120
blast CAE73733 Hypothetical protein CBG21259 [Caenorhabditis briggsae] 1.0E-119
blast AAF47994 CG2076-PA [Drosophila melanogaster] gb|AAQ22414.1| RH72958p [Drosophila melanogaster] ref|NP_572681.1| CG2076-PA [Drosophila melanogaster] 2.0E-80
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741296.1 7 70-92,113-135,145-167,180-202,206-225,232-254,258-280
K11H12.8a 7 70-92,113-135,145-167,180-202,206-225,232-254,258-280
SNAP00000015762 7 70-92,113-135,145-167,180-202,206-225,232-254,258-280
GENEFINDER00000015778 7 64-86,107-129,139-161,174-196,200-219,226-248,252-274
Sequence
Target Sequence 
>C. ELEGANS:184428_AT
gattatgagattgaccgctggcggaggaatgatgtcactcttcggaacaatggctgcaat
gatcgcttcgggaatgctcgccagatcaattgactacgagagcaccgtcgccaagcatct
cgcctgggctcttcactgtggtgttctcggagccgtcttcgcgccgctgtgcttcatggc
cggcccagttctcactcgtgcggcttggtacacggccggaatcgttggaggcctctcggc
caccgccatcaccgctccatcggagaagtttttgatgatgtccggaccacttgccatggg
atttggcgttgtttttgtcgccaacattggagcattcttcttgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTATGAGATTGACCGCTGGCGGA 695 429 429 Antisense
GATGTCACTCTTCGGAACAATGGCT 583 409 459 Antisense
AATGGCTGCAATGATCGCTTCGGGA 519 161 477 Antisense
CTTCGGGAATGCTCGCCAGATCAAT 660 219 494 Antisense
TCTTCACTGTGGTGTTCTCGGAGCC 276 617 558 Antisense
TGCGGCTTGGTACACGGCCGGAATC 664 287 627 Antisense
CGGCCGGAATCGTTGGAGGCCTCTC 462 235 641 Antisense
CCATCACCGCTCCATCGGAGAAGTT 441 271 674 Antisense
AGTTTTTGATGATGTCCGGACCACT 484 61 695 Antisense
CCGGACCACTTGCCATGGGATTTGG 125 265 710 Antisense
CAACATTGGAGCATTCTTCTTGCCA 211 189 750 Antisense
Sequence Source Affymetrix Proprietary Database