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[184427_s_at]

Description T23E7.2D /REP_DB=WormBase Gene ID /WP=CE24008 /TR=Q9TXR8 /GB=AAD47130.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 49      4grp_high_8_8 > 51      6grp_highest_nonorm > 84      6grp_total > 39      4grp_total > 52      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 480
1 2 3 4 range
A 382.9
(3)
P 		314.9
(1.7)
P 		369.3
(2.7)
P 		61.2
(-3)
A 		322
B 331.5
(0.9)
P 		472.2
(3)
P 		348.4
(1.1)
P 		71.9
(-3)
P 		400
C 384.5
(1)
P 		541.1
(3)
P 		331
(0.3)
P 		70.8
(-3)
P 		470
avr 366.3
(1.8) 		442.7
(3) 		349.6
(1.5) 		68
(-3) 		375

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 756
1 2 3 4 5 6 range
A 508.5
(-1.3)
P 		646.2
(0.1)
P 		345.4
(-3)
P 		571.4
(-0.7)
P 		827.1
(1.9)
P 		931.9
(3)
P 		587
B 650.9
(1.9)
P 		518.6
(-0.3)
P 		353.2
(-3)
P 		571.3
(0.6)
P 		675.1
(2.3)
P 		716.5
(3)
P 		363
C 1101.2
(3)
P 		530.6
(-1.7)
P 		656.5
(-0.6)
P 		365.1
(-3)
P 		1100.8
(3)
P 		407.8
(-2.7)
P 		736
avr 753.5
(1.4) 		565.1
(-1.4) 		451.7
(-3) 		502.6
(-2.3) 		867.7
(3) 		685.4
(0.4) 		416
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 139.4
(3)
P 		68.3
(-0.3)
P 		96.5
(1)
P 		9
(-3)
A 		130
B 105.7
(2.4)
P 		116.6
(3)
P 		80.7
(0.9)
P 		15.3
(-3)
P 		101
C 127.3
(1.8)
P 		155.6
(3)
P 		115.4
(1.3)
P 		11.9
(-3)
P 		144
avr 124.1
(3) 		113.5
(2.4) 		97.5
(1.6) 		12.1
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 335
1 2 3 4 5 6 range
A 93.7
(-2.4)
P 		229.8
(2.3)
P 		75.2
(-3)
P 		144.9
(-0.6)
P 		249.6
(3)
P 		226.9
(2.2)
P 		174
B 226.5
(1.5)
P 		172.6
(-0.2)
P 		85.8
(-3)
P 		151.3
(-0.9)
P 		274.3
(3)
P 		267.2
(2.8)
P 		189
C 408.2
(3)
P 		161.9
(-1.4)
P 		167.1
(-1.3)
P 		73.4
(-3)
P 		356.2
(2.1)
P 		136.5
(-1.9)
P 		335
avr 242.8
(1.4) 		188.1
(-0.4) 		109.4
(-3) 		123.2
(-2.6) 		293.4
(3) 		210.2
(0.3) 		184
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184427_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17781
Sequence Type Exemplar sequence
Representative Public ID T23E7.2D NCBI
Target Description T23E7.2D /REP_DB=WormBase Gene ID /WP=CE24008 /TR=Q9TXR8 /GB=AAD47130.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078454(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078454 NCBI Caenorhabditis elegans T23E7.2d (T23E7.2) mRNA, complete cds. 11/11 None
T23E7.2d ENSEMBL cdna:known chromosome:CEL140:X:17679404:17680685:1 gene:T23E7.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181789 5 1 NM_078451 176362_s_at (11)
NM_078452 184881_s_at (11)
NM_078453 173056_at (11), 176362_s_at (11)
NM_078454 173056_at (11), 184427_s_at (11)
NM_171823 173056_at (11), 176362_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17679446-17680304(+) 100.0 100.0
Public Domain and Genome References
Ensembl T23E7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD47130 Hypothetical protein T23E7.2d [Caenorhabditis elegans] ref|NP_510855.1| T23E7.2d [Caenorhabditis elegans] 2.0E-56
blast AAD47129 Hypothetical protein T23E7.2c [Caenorhabditis elegans] ref|NP_510853.1| T23E7.2c [Caenorhabditis elegans] 2.0E-38
blast CAE58704 Hypothetical protein CBG01888 [Caenorhabditis briggsae] 2.0E-32
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510855.1 1 15-37
T23E7.2d 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:184427_S_AT
tgccttttttctcagagcacacgctcattcttattaaaaatacattttatgttcaatatt
gcatcccttacttcttctattatcctttctacctgtataacgtttatacactctctttga
taaccaaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCTTTTTTCTCAGAGCACACGCT 371 585 14 Antisense
TTCTCAGAGCACACGCTCATTCTTA 653 691 22 Antisense
GAGCACACGCTCATTCTTATTAAAA 236 391 28 Antisense
ACACGCTCATTCTTATTAAAAATAC 8 111 32 Antisense
ATTTTATGTTCAATATTGCATCCCT 479 15 57 Antisense
ATGTTCAATATTGCATCCCTTACTT 599 47 62 Antisense
TTCTATTATCCTTTCTACCTGTATA 291 691 88 Antisense
TATCCTTTCTACCTGTATAACGTTT 206 659 94 Antisense
ATAACGTTTATACACTCTCTTTGAT 612 23 110 Antisense
GTTTATACACTCTCTTTGATAACCA 489 449 115 Antisense
ATACACTCTCTTTGATAACCAAAAG 459 23 119 Antisense
Sequence Source Affymetrix Proprietary Database