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[184426_at]

Description F26G5.10 /REP_DB=WormBase Gene ID /WP=CE09705 /TR=O16937 /GB=AAC48042.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 02      6grp_cgc > 96      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 6.5
(-1.6)
A 		2.8
(-3)
A 		3.4
(-2.8)
A 		18.6
(3)
A 		16
B 3.9
(-1.9)
A 		6.6
(3)
A 		3.3
(-3)
A 		4.3
(-1.2)
A 		3
C 5.1
(-2.8)
A 		4.7
(-2.9)
A 		3.4
(-3)
A 		62.3
(3)
A 		59
avr 5.2
(-2.6) 		4.7
(-2.7) 		3.4
(-3) 		28.4
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 8.9
(3)
A 		1.9
(-3)
A 		2
(-2.9)
A 		2.2
(-2.7)
A 		6.5
(0.9)
A 		2.3
(-2.7)
A 		7
B 2.8
(-3)
A 		3.2
(-2)
A 		3
(-2.5)
A 		4.7
(1.8)
A 		5.2
(3)
A 		3
(-2.5)
A 		2
C 2.5
(-3)
A 		4.7
(-2.3)
A 		2.6
(-3)
A 		22.8
(3)
A 		3.5
(-2.7)
A 		6.3
(-1.9)
A 		20
avr 4.7
(-1.2) 		3.3
(-2.4) 		2.5
(-3) 		9.9
(3) 		5.1
(-0.9) 		3.9
(-1.9) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.4
(2.1)
A 		0.6
(-3)
A 		0.9
(-2.1)
A 		2.7
(3)
A 		2
B 1.3
(0.8)
A 		1.6
(3)
A 		0.8
(-3)
A 		0.9
(-2.3)
A 		1
C 1.7
(-2.7)
A 		1.4
(-2.9)
A 		1.2
(-3)
A 		10.5
(3)
A 		9
avr 1.8
(-1.7) 		1.2
(-2.7) 		1
(-3) 		4.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.6
(1.5)
A 		0.7
(-1.9)
A 		0.4
(-3)
A 		0.6
(-2.3)
A 		2
(3)
A 		0.6
(-2.3)
A 		2
B 1
(-1.7)
A 		1
(-1.7)
A 		0.7
(-3)
A 		1.3
(-0.4)
A 		2.1
(3)
A 		1.1
(-1.3)
A 		1
C 0.9
(-2.7)
A 		1.4
(-1.9)
A 		0.7
(-3)
A 		4.6
(3)
A 		1.1
(-2.4)
A 		2.1
(-0.8)
A 		4
avr 1.2
(-0.8) 		1
(-1.5) 		0.6
(-3) 		2.2
(3) 		1.7
(1.1) 		1.3
(-0.4) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184426_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15814
Sequence Type Exemplar sequence
Representative Public ID F26G5.10 NCBI
Target Description F26G5.10 /REP_DB=WormBase Gene ID /WP=CE09705 /TR=O16937 /GB=AAC48042.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071935
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F26G5.10 ENSEMBL cdna:known chromosome:CEL140:V:4970127:4972857:-1 gene:F26G5.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071935 4/11 Cross Hyb Matching Probes None
GENEFINDER00000021550 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4970126-4972857(-) 100.0 100.0
Public Domain and Genome References
Ensembl F26G5.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504336 Serpentine Receptor, class SX family member (srsx-9) [Caenorhabditis elegans] gb|AAC48042.2| Hypothetical protein F26G5.10 [Caenorhabditis elegans] 1.0E-130
blast AAB65307 Serpentine receptor, class sx protein 11 [Caenorhabditis elegans] ref|NP_504338.2| Serpentine Receptor, class SX family member (srsx-11) [Caenorhabditis elegans] 1.0E-65
blast NP_001023863 Serpentine Receptor, class SX family member (srsx-10) [Caenorhabditis elegans] gb|AAX22288.1| Hypothetical protein F26G5.12 [Caenorhabditis elegans] 2.0E-63
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
F26G5.10 8 5-27,80-102,117-139,159-181,201-223,235-257,316-338,359-381
Sequence
Target Sequence 
>C. ELEGANS:184426_AT
gccttcagttttctgtgtccatttttatcttcacgtggtttttcagccaaattattgcac
tgctcattctgaaacaatattcgtcgtcaagttgggaaaacattatttacatgcacaatt
cgtttctcatgtctctgtcatacagcaacacattttacgtgacactgtggaaaagtaaag
aatatcgaaagcaatttaaaaacatttggtacccagaaagaactaatgaaaatgctttaa
ccgttttttatacccattctcttaaaattcacaattatcgatactgttatttattaattg
taagacacggtttgtttactgaacactctgacttcaattttcaagtgatgttaatccgct
gctcgctaatggctttatgctacgggcttcttttaacgcatttcctctatcttaaaaggc
tgaataaattgacgcgtaacatgagtcaaaaattttcaaaactgcaagttgaaattttga
gagcattaactattcaaaccttggttcctatagtttctagcgttttgccatgtgtgattt
gctggtactttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTTCAGTTTTCTGTGTCCATTTT 36 283 614 Antisense
GTGTCCATTTTTATCTTCACGTGGT 169 487 628 Antisense
CAGCCAAATTATTGCACTGCTCATT 258 203 657 Antisense
ACAATTCGTTTCTCATGTCTCTGTC 486 115 728 Antisense
GAACACTCTGACTTCAATTTTCAAG 559 351 934 Antisense
CAAGTGATGTTAATCCGCTGCTCGC 58 185 955 Antisense
CTGCTCGCTAATGGCTTTATGCTAC 628 237 972 Antisense
TTATGCTACGGGCTTCTTTTAACGC 631 659 988 Antisense
TTTTAACGCATTTCCTCTATCTTAA 649 675 1004 Antisense
ACCTTGGTTCCTATAGTTTCTAGCG 471 87 1111 Antisense
ATGTGTGATTTGCTGGTACTTTCCA 627 49 1143 Antisense
Sequence Source Affymetrix Proprietary Database