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[184425_at]

Description ZC204.10 /REP_DB=WormBase Gene ID /WP=CE15102 /TR=P91540 /GB=AAB37914.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 34      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 1.3
(-3)
A 		1.9
(-0)
A 		2
(0.5)
A 		2.5
(3)
A 		1
B 1.7
(-3)
A 		22.4
(3)
A 		2.9
(-2.7)
A 		16.8
(1.4)
A 		21
C 0.9
(-3)
A 		5.4
(1)
A 		2.1
(-1.9)
A 		7.6
(3)
A 		7
avr 1.3
(-3) 		9.9
(3) 		2.3
(-2.3) 		9
(2.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.4
(-3)
A 		1.9
(-1.3)
A 		2.1
(-0.7)
A 		2.7
(1.3)
A 		3.2
(3)
A 		2.5
(0.7)
A 		2
B 2.6
(-1.4)
A 		3.8
(-0.2)
A 		1.1
(-2.8)
A 		2.2
(-1.7)
A 		0.9
(-3)
A 		7.1
(3)
A 		6
C 1.9
(-0.4)
A 		2.5
(1.3)
A 		1
(-3)
A 		3.1
(3)
A 		1.1
(-2.7)
A 		2.9
(2.4)
A 		2
avr 2
(-1.7) 		2.7
(-0.2) 		1.4
(-3) 		2.7
(-0.2) 		1.7
(-2.4) 		4.2
(3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.5
(3)
A 		0.4
(-3)
A 		0.5
(3)
A 		0.4
(-3)
A 		0
B 0.5
(-3)
A 		5.5
(3)
A 		0.7
(-2.8)
A 		3.6
(0.7)
A 		5
C 0.3
(-3)
A 		1.6
(3)
A 		0.7
(-1.2)
A 		1.3
(1.6)
A 		1
avr 0.4
(-3) 		2.5
(3) 		0.6
(-2.4) 		1.8
(1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.7
(0.4)
A 		0.5
(-1.3)
A 		0.7
(0.4)
A 		1
(3)
A 		0.6
(-0.4)
A 		1
B 0.9
(-1.4)
A 		1.3
(-0.4)
A 		0.3
(-3)
A 		0.6
(-2.2)
A 		0.4
(-2.7)
A 		2.6
(3)
A 		2
C 0.7
(0.4)
A 		0.8
(1.3)
A 		0.3
(-3)
A 		0.6
(-0.4)
A 		0.4
(-2.1)
A 		1
(3)
A 		1
avr 0.6
(-1.8) 		0.9
(0) 		0.4
(-3) 		0.6
(-1.8) 		0.6
(-1.8) 		1.4
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184425_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4181
Sequence Type Exemplar sequence
Representative Public ID ZC204.10 NCBI
Target Description ZC204.10 /REP_DB=WormBase Gene ID /WP=CE15102 /TR=P91540 /GB=AAB37914.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061624(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061624 NCBI Caenorhabditis elegans ZC204.10 (ZC204.10) mRNA, complete cds. 11/11 None
SNAP00000031411 ENSEMBL cdna:SNAP chromosome:CEL140:II:1650822:1651583:-1 11/11 None
ZC204.10 ENSEMBL cdna:known chromosome:CEL140:II:1650822:1651583:-1 gene:ZC204.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000031425 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1650820-1651582(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC204.10
Entrez Gene 191114 Entrez gene
SwissProt P91540 EMBL-EBI
WormBase CE15102 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37914 Hypothetical protein ZC204.10 [Caenorhabditis elegans] ref|NP_494025.1| ZC204.10 [Caenorhabditis elegans] 1.0E-122
blast AAB37922 Hypothetical protein ZC204.7 [Caenorhabditis elegans] ref|NP_494026.1| ZC204.7 [Caenorhabditis elegans] 9.0E-86
blast AAC67486 Hypothetical protein F58E1.9 [Caenorhabditis elegans] ref|NP_494042.1| F58E1.9 [Caenorhabditis elegans] 1.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.4E-8
Sequence
Target Sequence 
>C. ELEGANS:184425_AT
taaccataacgcaatcagtttcattgagcctatcgttaaaatggcttaaaattcgtgatt
ttgtttccaagcccgaccaaattcttcaggcagcaaaaatctgcgagcattcagtaaaca
gtgatccagaagagttctatgtgccaggatgcacagtgaaacagtttattgatcatattg
cacacatattcttccagaacgagggaatgttaatacaaattgtgaatcttcagagcgact
atttgaaggatgttgaagaatatacaaaaaacgtgaatattaaaaatgttcatattgatt
ctacagagatggaagatgttccgcttcttaattttttctcctctgtggaactgttgtcag
tgtctgaaattcgagtcagtgattttattattattcaaaatgtcagaagtttggaacttc
atgtcgtgaaccttgactatatactaagttcaaacagttccgatattttattatactgtt
ttctttccaacaaagacctcaacctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACCATAACGCAATCAGTTTCATT 219 639 173 Antisense
CAGTTTCATTGAGCCTATCGTTAAA 64 205 188 Antisense
AGAAGAGTTCTATGTGCCAGGATGC 274 75 300 Antisense
TGATCATATTGCACACATATTCTTC 606 565 342 Antisense
TTGTGAATCTTCAGAGCGACTATTT 414 707 392 Antisense
GAAGATGTTCCGCTTCTTAATTTTT 599 323 484 Antisense
TTCTTAATTTTTTCTCCTCTGTGGA 618 689 497 Antisense
TCTCCTCTGTGGAACTGTTGTCAGT 279 611 509 Antisense
GGAACTTCATGTCGTGAACCTTGAC 423 525 585 Antisense
TTATTATACTGTTTTCTTTCCAACA 448 679 640 Antisense
TCTTTCCAACAAAGACCTCAACCTC 442 611 654 Antisense
Sequence Source Affymetrix Proprietary Database