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[184423_at]

Description R05C11.1 /REP_DB=WormBase Gene ID /WP=CE21088 /TR=Q9TYQ0 /GB=AAD12804.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 14      4grp_high_8_8 > 35      6grp_total > 03      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 126.7
(3)
P 		76.6
(-3)
P 		83.6
(-2.2)
A 		97.5
(-0.5)
P 		50
B 98.7
(0.4)
P 		118.3
(3)
P 		73.6
(-3)
A 		93.6
(-0.3)
P 		45
C 147
(2.2)
P 		155.6
(3)
P 		93
(-3)
P 		93.4
(-3)
P 		63
avr 124.1
(3) 		116.8
(1.9) 		83.4
(-3) 		94.8
(-1.3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 153.4
(3)
P 		117.9
(0.5)
P 		103.8
(-0.5)
P 		134.1
(1.7)
P 		105.9
(-0.3)
P 		67.5
(-3)
A 		86
B 117.7
(-0.7)
P 		163.1
(3)
P 		151.7
(2.1)
P 		98.1
(-2.3)
P 		108.9
(-1.5)
P 		90.1
(-3)
P 		73
C 205
(3)
P 		176.1
(1.9)
P 		75.8
(-2.1)
P 		155.9
(1)
P 		89.4
(-1.6)
P 		54
(-3)
P 		151
avr 158.7
(3) 		152.4
(2.6) 		110.4
(-0.3) 		129.4
(1) 		101.4
(-0.9) 		70.5
(-3) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 46.1
(3)
P 		16.6
(-2.6)
P 		21.9
(-1.6)
A 		14.3
(-3)
P 		32
B 31.5
(3)
P 		29.2
(2)
P 		17.1
(-3)
A 		19.9
(-1.8)
P 		14
C 48.7
(3)
P 		44.7
(2.3)
P 		32.4
(0)
P 		15.7
(-3)
P 		33
avr 42.1
(3) 		30.2
(0.2) 		23.8
(-1.3) 		16.6
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 28.3
(-0.2)
P 		41.9
(3)
P 		22.6
(-1.5)
P 		34
(1.1)
P 		32
(0.7)
P 		16.4
(-3)
A 		26
B 41
(0.2)
P 		54.3
(3)
P 		36.8
(-0.7)
P 		26
(-3)
P 		44.3
(0.9)
P 		33.6
(-1.4)
P 		28
C 76
(3)
P 		53.7
(0.7)
P 		19.3
(-2.9)
P 		31.3
(-1.6)
P 		28.9
(-1.9)
P 		18.1
(-3)
P 		58
avr 48.4
(2.6) 		50
(3) 		26.2
(-2.2) 		30.4
(-1.3) 		35.1
(-0.3) 		22.7
(-3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184423_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10736
Sequence Type Exemplar sequence
Representative Public ID R05C11.1 NCBI
Target Description R05C11.1 /REP_DB=WormBase Gene ID /WP=CE21088 /TR=Q9TYQ0 /GB=AAD12804.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067759(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067759 NCBI Caenorhabditis elegans R05C11.1 (R05C11.1) mRNA, complete cds. 11/11 None
GENEFINDER00000026672 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2064903:2072085:1 11/11 None
R05C11.1 ENSEMBL cdna:known chromosome:CEL140:IV:2068766:2071655:1 gene:R05C11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026666 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2068771-2071661(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05C11.1
Entrez Gene 187599 Entrez gene
SwissProt Q9TYQ0 EMBL-EBI
WormBase CE21088 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500160 R05C11.1 [Caenorhabditis elegans] gb|AAD12804.1| Hypothetical protein R05C11.1 [Caenorhabditis elegans] 1.0E-104
blast NP_500160 R05C11.1 [Caenorhabditis elegans] gb|AAD12804.1| Hypothetical protein R05C11.1 [Caenorhabditis elegans] 1.0E-103
blast CAE74703 Hypothetical protein CBG22518 [Caenorhabditis briggsae] 6.0E-97
blast CAE74703 Hypothetical protein CBG22518 [Caenorhabditis briggsae] 3.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR000698 EMBL-EBI Arrestin 1.7E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000026672 2 470-492,494-516
Sequence
Target Sequence 
>C. ELEGANS:184423_AT
tgcacagcgctgatggctattccagaggatggtgatactgaagtagtgtctgaaaaaacg
ttcaaagtgttctcgctgctcaacttggacgccccatatctacacgataaagcacatgtg
accgaggaggaggaaataaccggatgttgtggccggcggaaaggtgcccttatcgccaca
atgcaagtcgatgagattggtgtgatgccgggaatgacttcgaaaatcagtttaaccgtg
gagaataagacgaagaaacgaaaaaaatggatgaggaagaaggacaatcacgaatgtgtg
cttctatctttgtgtcagcaattggattttgtagccgtgaatcggaatgatccaatgatg
attgataggaaatctattacaatagctgtggagagtcatggaacctgcaaaacaaaagcc
ggcgttggacctcaaaccaaagaaatcgagttcagtgtacctcctaacctccctccaacg
tcaattcacgcgaatcgccttgtcacagtttcgtatttcttcaaattagatctggatcac
tttgacttagtattaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCACAGCGCTGATGGCTATTCCAG 344 577 16 Antisense
ACGCCCCATATCTACACGATAAAGC 166 91 104 Antisense
ATAACCGGATGTTGTGGCCGGCGGA 465 25 151 Antisense
GGCGGAAAGGTGCCCTTATCGCCAC 46 537 170 Antisense
GGTGTGATGCCGGGAATGACTTCGA 654 499 214 Antisense
AATGTGTGCTTCTATCTTTGTGTCA 625 163 308 Antisense
GCTGTGGAGAGTCATGGAACCTGCA 129 295 400 Antisense
GAAATCGAGTTCAGTGTACCTCCTA 209 359 457 Antisense
AACGTCAATTCACGCGAATCGCCTT 675 143 492 Antisense
AATCGCCTTGTCACAGTTTCGTATT 15 169 508 Antisense
GGATCACTTTGACTTAGTATTACCC 272 509 549 Antisense
Sequence Source Affymetrix Proprietary Database