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[184422_at]

Description R13D11.3 /REP_DB=WormBase Gene ID /WP=CE12786 /TR=O17015 /GB=AAB69949.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 56.5
(0.2)
P 		20.1
(-3)
A 		29.5
(-2.2)
A 		89.4
(3)
A 		69
B 48.6
(1.7)
A 		54.6
(3)
A 		47.5
(1.5)
A 		25.9
(-3)
A 		29
C 2.4
(-3)
A 		89.3
(1.8)
A 		41.7
(-0.8)
A 		110.3
(3)
P 		108
avr 35.8
(-3) 		54.7
(-0.1) 		39.6
(-2.4) 		75.2
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 52.1
(2.4)
A 		25.1
(-1.7)
A 		43.9
(1.2)
A 		16.3
(-3)
A 		28.8
(-1.1)
A 		56
(3)
P 		40
B 40.1
(1.8)
A 		23.6
(-0.6)
A 		7.3
(-3)
A 		13.8
(-2.1)
A 		48.6
(3)
A 		23.5
(-0.6)
A 		41
C 41.8
(1.4)
A 		52.3
(3)
A 		12.9
(-3)
A 		14.6
(-2.7)
A 		27.3
(-0.8)
A 		18.1
(-2.2)
A 		39
avr 44.7
(3) 		33.7
(0.8) 		21.4
(-1.7) 		14.9
(-3) 		34.9
(1) 		32.5
(0.5) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 20.6
(3)
P 		4.4
(-3)
A 		7.7
(-1.8)
A 		13.1
(0.2)
A 		16
B 15.5
(3)
A 		13.5
(1.8)
A 		11
(0.3)
A 		5.5
(-3)
A 		10
C 0.8
(-3)
A 		25.7
(3)
A 		14.5
(0.3)
A 		18.6
(1.3)
P 		25
avr 12.3
(-0.9) 		14.5
(3) 		11.1
(-3) 		12.4
(-0.7) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 9.6
(0.5)
A 		8.9
(0)
A 		9.6
(0.5)
A 		4.1
(-3)
A 		8.7
(-0.1)
A 		13.6
(3)
P 		10
B 14
(1.1)
A 		7.8
(-1)
A 		1.8
(-3)
A 		3.6
(-2.4)
A 		19.8
(3)
A 		8.7
(-0.7)
A 		18
C 15.5
(2.8)
A 		15.9
(3)
A 		3.3
(-2.8)
A 		2.9
(-3)
A 		8.8
(-0.3)
A 		6
(-1.6)
A 		13
avr 13
(3) 		10.9
(1.7) 		4.9
(-2.1) 		3.5
(-3) 		12.4
(2.6) 		9.4
(0.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184422_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14993
Sequence Type Exemplar sequence
Representative Public ID R13D11.3 NCBI
Target Description R13D11.3 /REP_DB=WormBase Gene ID /WP=CE12786 /TR=O17015 /GB=AAB69949.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070930(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070930 NCBI Caenorhabditis elegans R13D11.3 (R13D11.3) mRNA, complete cds. 11/11 None
GENEFINDER00000031837 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:814846:816703:1 11/11 None
R13D11.3 ENSEMBL cdna:known chromosome:CEL140:V:813556:816703:1 gene:R13D11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031833 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:812699-816703(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R13D11.3
Entrez Gene 187862 Entrez gene
SwissProt O17015 EMBL-EBI
WormBase CE28769 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503331 R13D11.3 [Caenorhabditis elegans] gb|AAK82916.1| Hypothetical protein R13D11.3 [Caenorhabditis elegans] 0.0
blast A88942 protein R13D11.3 [imported] - Caenorhabditis elegans 0.0
blast NP_503331 R13D11.3 [Caenorhabditis elegans] gb|AAK82916.1| Hypothetical protein R13D11.3 [Caenorhabditis elegans] 1.0E-162
blast A88942 protein R13D11.3 [imported] - Caenorhabditis elegans 1.0E-162
blast AAC69212 Hypothetical protein F41H8.2 [Caenorhabditis elegans] ref|NP_503335.2| F41H8.2 [Caenorhabditis elegans] 1.0E-119
blast AAC69212 Hypothetical protein F41H8.2 [Caenorhabditis elegans] ref|NP_503335.2| F41H8.2 [Caenorhabditis elegans] 1.0E-117
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503331.1 7 88-110,122-144,173-195,202-224,251-273,294-316,326-348
R13D11.3 7 88-110,122-144,173-195,202-224,251-273,294-316,326-348
GENEFINDER00000031837 7 10-32,45-67,96-118,125-147,174-196,217-239,249-271
Sequence
Target Sequence 
>C. ELEGANS:184422_AT
caggaatatcgcactgttcttccctgcattttaccgccgaatggaccaagagctccactc
gaacgcagttattgcagctgccctaatttttgcgatctttgatgacttcttatattggta
cacaactactattgagcatcatatcaattgtggaactatagggtgttttgtgagtgatca
atttcggtactactggggaatatccaatatggtcctgggattcatagcagtcttcctatc
gataacgattttttggaaattgaatttggtctcaaaggatcgtgattccatccaacaagc
cagttgtaaatacgccaaagcaaatcgcatctcaactggaatccttgtatcatctttact
atttctcacaataccaagtatcggagtaggtatagttgagctctcaggattctcaatttt
caagctagttgggccattttactcagcctgtttgcttgtcagtggttgttgcaatgggat
cattttcataactggtaactgggatagcattcacccaaaacctacaacatcgtctattct
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGGAATATCGCACTGTTCTTCCCT 353 209 747 Antisense
GCTCCACTCGAACGCAGTTATTGCA 668 297 798 Antisense
GCAGCTGCCCTAATTTTTGCGATCT 549 313 820 Antisense
GATTCATAGCAGTCTTCCTATCGAT 391 431 965 Antisense
GGATCGTGATTCCATCCAACAAGCC 81 513 1023 Antisense
AAATCGCATCTCAACTGGAATCCTT 195 119 1068 Antisense
TATCATCTTTACTATTTCTCACAAT 689 659 1094 Antisense
AGCTCTCAGGATTCTCAATTTTCAA 525 79 1145 Antisense
TACTCAGCCTGTTTGCTTGTCAGTG 544 645 1186 Antisense
GGATAGCATTCACCCAAAACCTACA 84 509 1248 Antisense
AAAACCTACAACATCGTCTATTCTA 534 131 1263 Antisense
Sequence Source Affymetrix Proprietary Database