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[184420_at]

Description Y17G7B.13 /REP_DB=WormBase Gene ID /WP=CE19047 /TR=Q9XXI1 /GB=CAA19460.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 31
(3)
A 		28.7
(0.6)
A 		28.5
(0.4)
A 		25.2
(-3)
A 		6
B 28.8
(-0.1)
A 		35.1
(0.6)
A 		2.3
(-3)
A 		57.2
(3)
A 		55
C 36.9
(1)
A 		17.5
(-3)
A 		30.4
(-0.3)
A 		46.4
(3)
A 		29
avr 32.2
(0.1) 		27.1
(-1.2) 		20.4
(-3) 		42.9
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 25
(1.4)
A 		6.8
(-2.6)
A 		5.4
(-2.9)
A 		4.8
(-3)
A 		32.2
(3)
A 		7.6
(-2.4)
A 		27
B 14.9
(-0.9)
A 		4
(-3)
A 		8.5
(-2.2)
A 		24.1
(0.8)
A 		21.8
(0.4)
A 		35.8
(3)
A 		32
C 61.9
(3)
A 		6.5
(-2.6)
A 		23.1
(-0.9)
A 		22
(-1)
A 		2.5
(-3)
A 		56.9
(2.5)
A 		59
avr 33.9
(3) 		5.8
(-3) 		12.3
(-1.6) 		17
(-0.6) 		18.8
(-0.2) 		33.4
(2.9) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 11.3
(3)
A 		6.2
(-1)
A 		7.5
(-0)
A 		3.7
(-3)
A 		8
B 9.2
(1.5)
A 		8.7
(1.2)
A 		0.5
(-3)
A 		12.2
(3)
A 		12
C 12.2
(3)
A 		5
(-3)
A 		10.6
(1.7)
A 		7.8
(-0.7)
A 		7
avr 10.9
(3) 		6.6
(-2.5) 		6.2
(-3) 		7.9
(-0.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 4.6
(-0.6)
A 		2.4
(-2.2)
A 		1.2
(-3)
A 		1.2
(-3)
A 		9.7
(3)
A 		1.8
(-2.6)
A 		9
B 5.2
(-1.1)
A 		1.3
(-3)
A 		2.1
(-2.6)
A 		6.4
(-0.5)
A 		8.8
(0.8)
A 		13.3
(3)
A 		12
C 23
(3)
A 		2
(-2.7)
A 		5.9
(-1.6)
A 		4.4
(-2)
A 		0.8
(-3)
A 		19.1
(1.9)
A 		22
avr 10.9
(2.7) 		1.9
(-3) 		3.1
(-2.2) 		4
(-1.7) 		6.4
(-0.2) 		11.4
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184420_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3435
Sequence Type Exemplar sequence
Representative Public ID Y17G7B.13 NCBI
Target Description Y17G7B.13 /REP_DB=WormBase Gene ID /WP=CE19047 /TR=Q9XXI1 /GB=CAA19460.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064163(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064163 NCBI Caenorhabditis elegans Y17G7B.13 (Y17G7B.13) mRNA, complete cds. 11/11 None
SNAP00000030322 ENSEMBL cdna:SNAP chromosome:CEL140:II:12026801:12048282:1 11/11 None
GENEFINDER00000030397 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12042885:12060067:1 11/11 None
Y17G7B.13 ENSEMBL cdna:known chromosome:CEL140:II:12042885:12049157:1 gene:Y17G7B.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12042881-12047896(+) 97.25 100.0
Public Domain and Genome References
Gene Title
Ensembl Y17G7B.13
Entrez Gene 189456 Entrez gene
SwissProt Q9XXI1 EMBL-EBI
WormBase CE19047 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19460 Hypothetical protein Y17G7B.13 [Caenorhabditis elegans] ref|NP_496564.1| Y17G7B.13 [Caenorhabditis elegans] 0.0
blast CAE73549 Hypothetical protein CBG21018 [Caenorhabditis briggsae] 0.0
blast CAA19456 Hypothetical protein Y17G7B.10b [Caenorhabditis elegans] ref|NP_496566.1| Y17G7B.10b [Caenorhabditis elegans] 0.0
blast CAA19455 Hypothetical protein Y17G7B.10a [Caenorhabditis elegans] ref|NP_496565.2| Y17G7B.10a [Caenorhabditis elegans] 0.0
blast CAE73550 Hypothetical protein CBG21019 [Caenorhabditis briggsae] 0.0
blast CAA19460 Hypothetical protein Y17G7B.13 [Caenorhabditis elegans] ref|NP_496564.1| Y17G7B.13 [Caenorhabditis elegans] 1.0E-171
blast CAE73549 Hypothetical protein CBG21018 [Caenorhabditis briggsae] 1.0E-150
blast AAZ99216 inositol polyphosphate IP4/IP5 2-kinase [Arabidopsis thaliana] gb|AAM13361.1| unknown protein [Arabidopsis thaliana] gb|AAL24380.1| Unknown protein [Arabidopsis thaliana] ref|NP_568613.1| expressed protein [Arabidopsis thaliana] 1.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR009286 EMBL-EBI Protein of unknown function DUF941 1.0E-126
Pfam IPR009286 EMBL-EBI Protein of unknown function DUF941 1.4E-62
Pfam IPR009286 EMBL-EBI Protein of unknown function DUF941 2.2E-103
Pfam IPR009286 EMBL-EBI Protein of unknown function DUF941 9.7E-85
Pfam IPR009286 EMBL-EBI Protein of unknown function DUF941 5.3E-116
Sequence
Target Sequence 
>C. ELEGANS:184420_AT
aatgtacgatttctgtccacttgacctgttctctggtaattattgccgaatgcaaaaagc
aattcattcgttattcctggttcctcaccgaaatctgagaatatttgtggatggaaatca
agtacattctgatgagaagcctctcgaagagaaaatgatttcggagatattgtttccgag
gcatgatgctacgtcggaggatcttatttcggcgctctgcctcgccctctcaggaaatca
ttcgaaaaagaagttccgacttcgaaattcatcggttttaggacaaattctcagagctca
aaaagtcgacgaaattggaattattcaggctcatgcgatatacgaaacaatggataatca
tgtgaagacaagcctcctggacaaatcagcgctaactcgagcaggattggagctcatttt
ggagcaaagttcccatgaaaatgaagaacttctgcagcaacttcgacgatatttcttggc
agca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTACGATTTCTGTCCACTTGAC 501 161 639 Antisense
TCCACTTGACCTGTTCTCTGGTAAT 235 589 654 Antisense
GCAATTCATTCGTTATTCCTGGTTC 335 323 697 Antisense
GTTTCCGAGGCATGATGCTACGTCG 634 449 810 Antisense
ACGTCGGAGGATCTTATTTCGGCGC 472 89 829 Antisense
CTCGCCCTCTCAGGAAATCATTCGA 537 233 859 Antisense
GGAATTATTCAGGCTCATGCGATAT 626 533 955 Antisense
CAAGCCTCCTGGACAAATCAGCGCT 127 187 1007 Antisense
ATCAGCGCTAACTCGAGCAGGATTG 703 27 1023 Antisense
GAACTTCTGCAGCAACTTCGACGAT 698 349 1084 Antisense
ACTTCGACGATATTTCTTGGCAGCA 123 103 1098 Antisense
Sequence Source Affymetrix Proprietary Database