[Home] | [Total List]

[184419_at]

Description Y56A3A.14 /REP_DB=WormBase Gene ID /WP=CE22581 /TR=Q9U232 /GB=CAB60508.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 26      6grp_cgc > 37      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 8.9
(-3)
A 		31.3
(-0.1)
A 		34.6
(0.4)
M 		54.9
(3)
P 		46
B 30.4
(1.6)
A 		34.2
(3)
A 		17.7
(-3)
A 		27.9
(0.7)
A 		17
C 0.9
(-3)
A 		34.7
(0.1)
P 		9.6
(-2.2)
A 		67.3
(3)
P 		66
avr 13.4
(-3) 		33.4
(0.3) 		20.6
(-1.8) 		50
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 22.8
(0.3)
A 		28.4
(1.1)
P 		41
(3)
P 		1
(-3)
A 		1.3
(-3)
A 		34.3
(2)
P 		40
B 18.7
(-2.8)
A 		50.7
(0.7)
P 		17.2
(-3)
A 		16.9
(-3)
A 		31.5
(-1.4)
P 		71.3
(3)
P 		54
C 24.9
(-1.8)
P 		31.7
(-0.6)
P 		18
(-3)
A 		28.7
(-1.2)
A 		22.2
(-2.3)
P 		52.9
(3)
P 		35
avr 22.1
(-1.9) 		36.9
(0.4) 		25.4
(-1.4) 		15.5
(-3) 		18.3
(-2.5) 		52.8
(3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.2
(-3)
A 		6.8
(0.7)
A 		9.1
(3)
M 		8
(1.9)
P 		6
B 9.7
(3)
A 		8.5
(1.7)
A 		4.1
(-3)
A 		5.9
(-1.1)
A 		6
C 0.3
(-3)
A 		10
(2.2)
P 		3.4
(-1.3)
A 		11.4
(3)
P 		11
avr 4.4
(-3) 		8.4
(3) 		5.5
(-1.4) 		8.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 4.2
(-0.6)
A 		10.1
(3)
P 		8.9
(2.3)
P 		0.3
(-3)
A 		0.4
(-2.9)
A 		8.4
(2)
P 		10
B 6.5
(-2.4)
A 		16.9
(0.4)
P 		4.2
(-3)
A 		4.5
(-2.9)
A 		12.8
(-0.7)
P 		26.6
(3)
P 		22
C 9.2
(-0.9)
P 		9.7
(-0.7)
P 		4.6
(-3)
A 		5.8
(-2.5)
A 		7.2
(-1.8)
P 		17.7
(3)
P 		13
avr 6.6
(-1.7) 		12.2
(0.7) 		5.9
(-2) 		3.5
(-3) 		6.8
(-1.6) 		17.6
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184419_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7417
Sequence Type Exemplar sequence
Representative Public ID Y56A3A.14 NCBI
Target Description Y56A3A.14 /REP_DB=WormBase Gene ID /WP=CE22581 /TR=Q9U232 /GB=CAB60508.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067145(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067145 NCBI Caenorhabditis elegans Y56A3A.14 (Y56A3A.14) mRNA, complete cds. 11/11 None
GENEFINDER00000035235 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11907405:11909765:1 9/11 None
Y56A3A.14 ENSEMBL cdna:known chromosome:CEL140:III:11907405:11908350:1 gene:Y56A3A.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11907400-11908346(+) 100.0 100.0
chrIII:11882465-11883411(-) 93.8 93.8
Public Domain and Genome References
Gene Title
Gene Symbol sdz-33
Ensembl Y56A3A.14
Entrez Gene 176621 Entrez gene
SwissProt Q9U232 EMBL-EBI
WormBase CE22581 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60508 Hypothetical protein Y56A3A.14 [Caenorhabditis elegans] ref|NP_499546.1| Y56A3A.14 [Caenorhabditis elegans] 1.0E-168
blast CAB60509 Hypothetical protein Y56A3A.15 [Caenorhabditis elegans] ref|NP_499547.1| Y56A3A.15 [Caenorhabditis elegans] 1.0E-168
blast CAB60522 Hypothetical protein Y56A3A.10 [Caenorhabditis elegans] ref|NP_499540.1| Y56A3A.10 [Caenorhabditis elegans] 1.0E-146
blast CAB60508 Hypothetical protein Y56A3A.14 [Caenorhabditis elegans] ref|NP_499546.1| Y56A3A.14 [Caenorhabditis elegans] 1.0E-131
blast CAB60509 Hypothetical protein Y56A3A.15 [Caenorhabditis elegans] ref|NP_499547.1| Y56A3A.15 [Caenorhabditis elegans] 1.0E-126
blast CAB60522 Hypothetical protein Y56A3A.10 [Caenorhabditis elegans] ref|NP_499540.1| Y56A3A.10 [Caenorhabditis elegans] 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.3E-6
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.3E-7
Sequence
Target Sequence 
>C. ELEGANS:184419_AT
gagaactgttgaagtcgttattgtatcttctgaaattcaaagttgtcacctgcttaagct
gttcccttcgttaagatatttgggagtttacaaagcaccaattagtgctcaaatccttac
atacaatttacttcacctagaagttaagacaaaagtgacgctaaacgacattttgatttc
caattgttcgaacttctcgataagtggaaacgatgtttccgacaaggaattgaatttttt
catgagatcatggattaaaggatccaatccccgtttaactaaattctatatccgtaattc
gctaagggtacgagacccatatttggaaaccgtcctatttcaaaacatcgattatattga
aacacacaagaagatatattggagaaccttcgaaatttcgagacccgatggaacaaaagc
agacgtcatgtggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAACTGTTGAAGTCGTTATTGTA 595 391 438 Antisense
GTCGTTATTGTATCTTCTGAAATTC 608 473 451 Antisense
GCTTAAGCTGTTCCCTTCGTTAAGA 82 305 489 Antisense
AGCTGTTCCCTTCGTTAAGATATTT 331 81 494 Antisense
CACCAATTAGTGCTCAAATCCTTAC 673 199 533 Antisense
TTAGTGCTCAAATCCTTACATACAA 65 679 539 Antisense
TTACATACAATTTACTTCACCTAGA 602 683 554 Antisense
AAGACAAAAGTGACGCTAAACGACA 200 147 583 Antisense
ATTCTATATCCGTAATTCGCTAAGG 234 11 720 Antisense
GAGACCCATATTTGGAAACCGTCCT 269 393 749 Antisense
GGAACAAAAGCAGACGTCATGTGGG 289 527 847 Antisense
Sequence Source Affymetrix Proprietary Database