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[184418_at]

Description K11H12.6 /REP_DB=WormBase Gene ID /WP=CE12156 /TR=P91371 /GB=AAC24396.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 22      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 61.9
(3)
A 		30.5
(-2.9)
A 		30.1
(-3)
A 		44.2
(-0.3)
A 		32
B 42.4
(3)
A 		5
(-3)
A 		6.6
(-2.7)
A 		15.8
(-1.3)
A 		37
C 39
(-0.9)
A 		25.9
(-1.9)
A 		12
(-3)
A 		89.1
(3)
A 		77
avr 47.8
(2.7) 		20.5
(-2.2) 		16.2
(-3) 		49.7
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 12.5
(-1.5)
A 		7
(-3)
A 		11.3
(-1.8)
A 		28.7
(3)
A 		17.3
(-0.2)
A 		8.5
(-2.6)
A 		22
B 10
(-3)
A 		29.9
(3)
A 		14.2
(-1.7)
A 		22.3
(0.7)
A 		26.5
(2)
A 		12
(-2.4)
A 		20
C 6.6
(-2.9)
A 		6.7
(-2.8)
A 		25.6
(1.6)
A 		6
(-3)
A 		31.4
(3)
A 		15.6
(-0.7)
A 		25
avr 9.7
(-3) 		14.5
(-1.1) 		17
(-0.2) 		19
(0.6) 		25.1
(3) 		12
(-2.1) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 22.6
(3)
A 		6.6
(-3)
A 		7.9
(-2.5)
A 		6.5
(-3)
A 		16
B 13.5
(3)
A 		1.2
(-3)
A 		1.5
(-2.9)
A 		3.4
(-1.9)
A 		12
C 12.9
(1.8)
A 		7.4
(-1.2)
A 		4.2
(-3)
A 		15
(3)
A 		11
avr 16.3
(3) 		5.1
(-2.7) 		4.5
(-3) 		8.3
(-1.1) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.3
(-2.8)
A 		2.5
(-2.5)
A 		2.5
(-2.5)
A 		7.3
(3)
A 		5.2
(0.6)
A 		2.1
(-3)
A 		5
B 3.5
(-3)
A 		9.9
(2.3)
A 		3.5
(-3)
A 		5.9
(-1)
A 		10.8
(3)
A 		4.5
(-2.2)
A 		7
C 2.5
(-2.1)
A 		2.1
(-2.4)
A 		6.5
(0.5)
A 		1.2
(-3)
A 		10.2
(3)
A 		5.2
(-0.3)
A 		9
avr 2.8
(-3) 		4.8
(-1) 		4.2
(-1.6) 		4.8
(-1) 		8.7
(3) 		3.9
(-1.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184418_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10735
Sequence Type Exemplar sequence
Representative Public ID K11H12.6 NCBI
Target Description K11H12.6 /REP_DB=WormBase Gene ID /WP=CE12156 /TR=P91371 /GB=AAC24396.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067566(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067566 NCBI Caenorhabditis elegans K11H12.6 (K11H12.6) mRNA, complete cds. 10/11 None
SNAP00000015764 ENSEMBL cdna:SNAP chromosome:CEL140:IV:667398:668556:1 10/11 None
GENEFINDER00000015775 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:667398:668556:1 10/11 None
K11H12.6 ENSEMBL cdna:known chromosome:CEL140:IV:667398:668556:1 gene:K11H12.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:667403-668562(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K11H12.6
Entrez Gene 187313 Entrez gene
SwissProt P91371 EMBL-EBI
WormBase CE34340 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_499967 K11H12.6 [Caenorhabditis elegans] gb|AAC24396.2| Hypothetical protein K11H12.6 [Caenorhabditis elegans] 3.0E-74
blast NP_499966 K11H12.7 [Caenorhabditis elegans] gb|AAC24401.1| Hypothetical protein K11H12.7 [Caenorhabditis elegans] 3.0E-41
blast CAE58463 Hypothetical protein CBG01603 [Caenorhabditis briggsae] 2.0E-36
Sequence
Target Sequence 
>C. ELEGANS:184418_AT
tgcggctttttatagtgtttgcccccttgttcgcagtctctgcccctctcaactgctaca
tttgcaatagtaagaaacaaccggattgtatcgacaattatcaagcatttaatacgattt
gcccagtcagatcgctcggtggagtgaagctgcatgagccagttggatgccgtgtgaccc
gtcagtattccaaagaaaagatgtggattatccgagaatgcggctaccttggcgaagaac
gtgaacgaaagttcaacacaaccacctacttgaatggggtaaaggaacctgcaacatgtg
tcttctcccaatgctctgaaaacctttgtaactctgccgaatcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGGCTTTTTATAGTGTTTGCCCC 508 583 14 Antisense
TACGATTTGCCCAGTCAGATCGCTC 109 649 126 Antisense
GATCGCTCGGTGGAGTGAAGCTGCA 462 417 143 Antisense
TGAGCCAGTTGGATGCCGTGTGACC 336 569 168 Antisense
TGTGACCCGTCAGTATTCCAAAGAA 122 557 186 Antisense
ATCCGAGAATGCGGCTACCTTGGCG 26 39 223 Antisense
GGCTACCTTGGCGAAGAACGTGAAC 21 537 235 Antisense
AACACAACCACCTACTTGAATGGGG 142 133 268 Antisense
AGGAACCTGCAACATGTGTCTTCTC 217 55 296 Antisense
TGTCTTCTCCCAATGCTCTGAAAAC 11 559 312 Antisense
ACCTTTGTAACTCTGCCGAATCATC 222 87 335 Antisense
Sequence Source Affymetrix Proprietary Database