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[184417_s_at]

Description Y47D3A.22 /REP_DB=WormBase Gene ID /WP=CE28127 /TR=Q9U2C5 /GB=CAB57896.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 94      6grp_total > 96      4grp_total > 22      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 197.9
(3)
M 		168.9
(0.7)
A 		123.4
(-3)
A 		181
(1.6)
A 		75
B 163.2
(3)
A 		123.8
(-3)
A 		156.8
(2)
A 		134.7
(-1.3)
A 		39
C 157.8
(-0.7)
P 		158.2
(-0.7)
A 		125.7
(-3)
A 		210.8
(3)
A 		85
avr 173
(2.6) 		150.3
(-0.8) 		135.3
(-3) 		175.5
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 178.5
(-2)
A 		140.3
(-3)
P 		152.6
(-2.7)
A 		269.6
(0.3)
P 		334
(1.9)
P 		376
(3)
P 		236
B 147.1
(-3)
A 		190.9
(-1.6)
P 		182
(-1.9)
M 		164.7
(-2.4)
M 		276.2
(1)
P 		338.9
(3)
P 		192
C 140.8
(-3)
P 		272.4
(1.4)
A 		176.7
(-1.8)
P 		284.7
(1.9)
P 		259
(1)
P 		318.7
(3)
P 		178
avr 155.5
(-3) 		201.2
(-1.5) 		170.4
(-2.5) 		239.7
(-0.3) 		289.7
(1.3) 		344.5
(3) 		189
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 72.1
(3)
M 		36.7
(-1.7)
A 		32.3
(-2.2)
A 		26.5
(-3)
A 		46
B 52
(3)
A 		30.6
(-2.5)
A 		36.3
(-1)
A 		28.7
(-3)
A 		23
C 52.2
(3)
P 		45.5
(0.6)
A 		43.8
(-0)
A 		35.5
(-3)
A 		17
avr 58.8
(3) 		37.6
(-1.4) 		37.5
(-1.5) 		30.2
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 32.9
(-3)
A 		49.9
(-1.5)
P 		33.2
(-3)
A 		68.4
(0.1)
P 		100.8
(3)
P 		91.6
(2.2)
P 		68
B 51.2
(-2.4)
A 		63.5
(-1.6)
P 		44.2
(-3)
M 		43.6
(-3)
M 		112.2
(2)
P 		126.4
(3)
P 		83
C 52.2
(-2.3)
P 		83.1
(0.7)
A 		45
(-3)
P 		57.2
(-1.8)
P 		83.8
(0.8)
P 		106.7
(3)
P 		62
avr 45.4
(-2.6) 		65.5
(-0.8) 		40.8
(-3) 		56.4
(-1.6) 		98.9
(2.2) 		108.2
(3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184417_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7587
Sequence Type Exemplar sequence
Representative Public ID Y47D3A.22 NCBI
Target Description Y47D3A.22 /REP_DB=WormBase Gene ID /WP=CE28127 /TR=Q9U2C5 /GB=CAB57896.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067051(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067051 NCBI Caenorhabditis elegans Y47D3A.22 (Y47D3A.22) mRNA, complete cds. 11/11 None
GENEFINDER00000007291 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11279631:11290442:-1 11/11 None
SNAP00000007219 ENSEMBL cdna:SNAP chromosome:CEL140:III:11286298:11290442:-1 11/11 None
Y47D3A.22 ENSEMBL cdna:known chromosome:CEL140:III:11286215:11290576:-1 gene:Y47D3A.22 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11286293-11290438(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D3A.22
Entrez Gene 176558 Entrez gene
SwissProt Q9U2C5 EMBL-EBI
WormBase CE32261 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.27923.1.S1_AT similar to mindbomb homolog 1 cfa
DROSOPHILA_2:1632687_AT dm
DROSGENOME1:141622_AT dm
CHICKEN:GGA.9885.1.S1_AT mindbomb homolog 1 (Drosophila) gga
CHICKEN:GGAAFFX.9512.2.S1_AT mindbomb homolog 1 (Drosophila) gga
CHICKEN:GGAAFFX.9512.2.S1_S_AT mindbomb homolog 1 (Drosophila) gga
HG-U95AV2:409_AT mindbomb homolog 1 (Drosophila) hs
HC-G110:409_AT mindbomb homolog 1 (Drosophila) hs
HG-U133_PLUS_2:200693_AT mindbomb homolog 1 (Drosophila) hs
HG-U133A:200693_AT mindbomb homolog 1 (Drosophila) hs
HG-U133A_2:200693_AT mindbomb homolog 1 (Drosophila) hs
HG-U133_PLUS_2:213699_S_AT mindbomb homolog 1 (Drosophila) hs
HG-U133A_2:213699_S_AT mindbomb homolog 1 (Drosophila) hs
HG-U133A:213699_S_AT mindbomb homolog 1 (Drosophila) hs
HU35KSUBA:RC_AA425367_AT mindbomb homolog 1 (Drosophila) hs
HU35KSUBA:RC_AA487510_AT mindbomb homolog 1 (Drosophila) hs
HU35KSUBA:RC_AA485223_AT mindbomb homolog 1 (Drosophila) hs
HU35KSUBD:RC_AA280738_AT mindbomb homolog 1 (Drosophila) hs
HU35KSUBD:RC_T48225_AT mindbomb homolog 1 (Drosophila) hs
HUGENEFL:X56468_AT mindbomb homolog 1 (Drosophila) hs
U133_X3P:G5803226_3P_A_AT mindbomb homolog 1 (Drosophila) hs
U133_X3P:HS.74405.2.A1_3P_A_AT mindbomb homolog 1 (Drosophila) hs
U133_X3P:HS.34892.0.S4_3P_AT mindbomb homolog 1 (Drosophila) hs
U133_X3P:HS.34892.0.S3_3P_AT mindbomb homolog 1 (Drosophila) hs
U133_X3P:HS.34892.0.S2_3P_AT mindbomb homolog 1 (Drosophila) hs
U133_X3P:HS.34892.0.S1_3P_AT mindbomb homolog 1 (Drosophila) hs
HG-U133_PLUS_2:1558645_AT mindbomb homolog 1 (Drosophila) hs
HG-U133_PLUS_2:224720_AT mindbomb homolog 1 (Drosophila) hs
HG-U133B:224720_AT mindbomb homolog 1 (Drosophila) hs
HG-U133_PLUS_2:224722_AT mindbomb homolog 1 (Drosophila) hs
HG-U133B:224722_AT mindbomb homolog 1 (Drosophila) hs
HG-U133_PLUS_2:224725_AT mindbomb homolog 1 (Drosophila) hs
HG-U133B:224725_AT mindbomb homolog 1 (Drosophila) hs
HG-U133_PLUS_2:224726_AT mindbomb homolog 1 (Drosophila) hs
HG-U133B:224726_AT mindbomb homolog 1 (Drosophila) hs
HG-U95B:45761_AT mindbomb homolog 1 (Drosophila) hs
HG-U95B:50934_AT mindbomb homolog 1 (Drosophila) hs
HG-U95C:55971_AT mindbomb homolog 1 (Drosophila) hs
HG-U95C:60289_AT mindbomb homolog 1 (Drosophila) hs
HG-U95C:61693_AT mindbomb homolog 1 (Drosophila) hs
HG-U95D:78092_AT mindbomb homolog 1 (Drosophila) hs
HU35KSUBB:RC_AA063595_AT Mindbomb homolog 1 (Drosophila) hs
U133_X3P:HS2.368432.1.S1_3P_AT Mindbomb homolog 1 (Drosophila) hs
U133_X3P:HS.50918.0.A1_3P_AT Mindbomb homolog 1 (Drosophila) hs
HG-U133_PLUS_2:236573_AT Mindbomb homolog 1 (Drosophila) hs
HG-U133B:236573_AT Mindbomb homolog 1 (Drosophila) hs
HG-U95B:46898_AT Mindbomb homolog 1 (Drosophila) hs
HG-U95D:72728_AT Mindbomb homolog 1 (Drosophila) hs
HG-U133_PLUS_2:240446_AT Mindbomb homolog 1 (Drosophila) hs
HG-U133B:240446_AT Mindbomb homolog 1 (Drosophila) hs
HG-U95B:54196_AT Mindbomb homolog 1 (Drosophila) hs
HG-U95C:55729_AT Mindbomb homolog 1 (Drosophila) hs
HG-U95D:75413_AT Mindbomb homolog 1 (Drosophila) hs
HG-U95E:90358_AT Mindbomb homolog 1 (Drosophila) hs
HU35KSUBC:RC_H70622_AT Mindbomb homolog 1 (Drosophila) hs
U133_X3P:HS.140903.0.A1_3P_AT Mindbomb homolog 1 (Drosophila) hs
MOUSE430A_2:1451818_AT mindbomb homolog 1 (Drosophila) mm
MOUSE430_2:1451818_AT mindbomb homolog 1 (Drosophila) mm
MOE430A:1451818_AT mindbomb homolog 1 (Drosophila) mm
MG-U74BV2:114494_AT mindbomb homolog 1 (Drosophila) mm
MG-U74BV2:163167_AT mindbomb homolog 1 (Drosophila) mm
MOE430B:1433853_AT mindbomb homolog 1 (Drosophila) mm
MOUSE430_2:1433853_AT mindbomb homolog 1 (Drosophila) mm
MOE430B:1454740_AT mindbomb homolog 1 (Drosophila) mm
MOUSE430_2:1454740_AT mindbomb homolog 1 (Drosophila) mm
MOE430B:1440579_AT Mindbomb homolog 1 (Drosophila) (Mib1), mRNA mm
MOUSE430_2:1440579_AT Mindbomb homolog 1 (Drosophila) (Mib1), mRNA mm
MU19KSUBB:TC30881_AT Mindbomb homolog 1 (Drosophila) (Mib1), mRNA mm
MU19KSUBB:TC31322_AT Mindbomb homolog 1 (Drosophila) (Mib1), mRNA mm
MU19KSUBB:TC31322_G_AT Mindbomb homolog 1 (Drosophila) (Mib1), mRNA mm
MU19KSUBC:TC38617_AT Mindbomb homolog 1 (Drosophila) (Mib1), mRNA mm
RAE230B:1396481_AT Mindbomb homolog 1 (Drosophila) (predicted) rn
RAT230_2:1396481_AT Mindbomb homolog 1 (Drosophila) (predicted) rn
RAE230B:1397745_AT Mindbomb homolog 1 (Drosophila) (predicted) rn
RAT230_2:1397745_AT Mindbomb homolog 1 (Drosophila) (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB57896 Hypothetical protein Y47D3A.22 [Caenorhabditis elegans] ref|NP_499452.2| Y47D3A.22 [Caenorhabditis elegans] 0.0
blast CAE67648 Hypothetical protein CBG13208 [Caenorhabditis briggsae] 0.0
blast CAB57897 Hypothetical protein Y47D3A.23a [Caenorhabditis elegans] ref|NP_001022876.1| Y47D3A.23a [Caenorhabditis elegans] sp|Q9U2C4|GALT9_CAEEL Probable N-acetylgalactosaminyltransferase 9 (Protein-UDP acetylgalactosaminyltransferase 9) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 9) (pp-GaNTase 9) 0.0
blast AAC13679 GLY9 [Caenorhabditis elegans] 0.0
blast XP_226175 PREDICTED: similar to mind bomb [Rattus norvegicus] 1.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 2.6E-8
Pfam IPR002110 EMBL-EBI Ankyrin 2.9E-4
Pfam IPR002110 EMBL-EBI Ankyrin 1.1
Pfam IPR002110 EMBL-EBI Ankyrin 5.5E-5
Pfam IPR002110 EMBL-EBI Ankyrin 6.6
Pfam IPR002110 EMBL-EBI Ankyrin 0.064
Pfam IPR002110 EMBL-EBI Ankyrin 6.7E-7
Pfam IPR002110 EMBL-EBI Ankyrin 0.11
Pfam IPR002110 EMBL-EBI Ankyrin 24.0
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 1.5E-28
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.5E-5
Pfam IPR002110 EMBL-EBI Ankyrin 0.45
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.5E-5
Sequence
Target Sequence 
>C. ELEGANS:184417_S_AT
tcatgtctcaattcggttgccactgtcaaattggacccgtgcggtcatcgggtcgcttgt
gtcgattgtacggagaaagtggcaatccgccgatgcccagtgtgtcgtcaatttatcaac
gaggctcatgatcaaggtatttgcgaggatttacgggacggaaagccagttcaaatcggc
tcccgctgccatgaaccatccgatggcgatcgtcaacaagtttcggcagaagttcgcaaa
caaatcgccgacgatgcggcgagagaggcgaaaatcgaagtggaacgtgaaaagcagaat
gagttgaatcaactgagaaaacgtttggagcagctcgagttggagacgaactgcgcgatt
tgtatggatttgaagattgcggttgtatttaattgtggacatacggcttgtgtggattgt
gc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATGTCTCAATTCGGTTGCCACTG 208 623 1864 Antisense
GCCACTGTCAAATTGGACCCGTGCG 257 273 1882 Antisense
TGGACCCGTGCGGTCATCGGGTCGC 16 547 1895 Antisense
GGGTCGCTTGTGTCGATTGTACGGA 205 495 1913 Antisense
AGAAAGTGGCAATCCGCCGATGCCC 322 73 1937 Antisense
ATGCCCAGTGTGTCGTCAATTTATC 627 41 1956 Antisense
AAAGCCAGTTCAAATCGGCTCCCGC 529 125 2025 Antisense
GCTGCCATGAACCATCCGATGGCGA 275 297 2048 Antisense
GGCGATCGTCAACAAGTTTCGGCAG 497 541 2068 Antisense
GGAGACGAACTGCGCGATTTGTATG 528 519 2205 Antisense
GACATACGGCTTGTGTGGATTGTGC 262 371 2261 Antisense
Sequence Source Affymetrix Proprietary Database