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[184416_s_at]

Description W03F11.1 /REP_DB=WormBase Gene ID /WP=CE14542 /TR=O01780 /GB=AAK18984.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 42      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 16.9
(-0.9)
A 		14.5
(-2.8)
A 		21.9
(3)
A 		14.2
(-3)
A 		8
B 3.7
(-3)
A 		66.1
(3)
A 		36.7
(0.2)
A 		31.9
(-0.3)
A 		62
C 33.9
(3)
A 		8.9
(-3)
A 		9.2
(-2.9)
A 		22.2
(0.2)
A 		25
avr 18.2
(-3) 		29.8
(3) 		22.6
(-0.7) 		22.8
(-0.6) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 403
1 2 3 4 5 6 range
A 25.8
(-2.6)
A 		25
(-2.6)
A 		5.7
(-3)
A 		9.3
(-2.9)
A 		286.2
(3)
P 		102.3
(-0.9)
A 		281
B 26.4
(-2.6)
A 		10.6
(-2.9)
A 		2.6
(-3)
A 		7.2
(-2.9)
A 		352.5
(3)
P 		90.9
(-1.5)
A 		350
C 16.4
(-2.8)
A 		15.7
(-2.9)
A 		6.3
(-3)
A 		5.9
(-3)
A 		405.7
(3)
P 		89.3
(-1.7)
A 		400
avr 22.9
(-2.7) 		17.1
(-2.8) 		4.9
(-3) 		7.5
(-3) 		348.1
(3) 		94.2
(-1.4) 		343
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 6.2
(3)
A 		3.1
(-1.5)
A 		5.7
(2.3)
A 		2.1
(-3)
A 		4
B 1.2
(-3)
A 		16.3
(3)
A 		8.5
(-0.1)
A 		6.8
(-0.8)
A 		15
C 11.2
(3)
A 		2.6
(-3)
A 		3.2
(-2.6)
A 		3.7
(-2.2)
A 		9
avr 6.2
(0.9) 		7.3
(3) 		5.8
(0.1) 		4.2
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 4.8
(-2.8)
A 		8.9
(-2.5)
A 		1.3
(-3)
A 		2.4
(-2.9)
A 		86.4
(3)
P 		24.9
(-1.3)
A 		85
B 9.2
(-2.6)
A 		3.5
(-2.9)
A 		0.6
(-3)
A 		1.9
(-2.9)
A 		143.2
(3)
P 		33.9
(-1.6)
A 		143
C 6.1
(-2.8)
A 		4.8
(-2.8)
A 		1.6
(-3)
A 		1.2
(-3)
A 		131.3
(3)
P 		29.9
(-1.7)
A 		130
avr 6.7
(-2.7) 		5.7
(-2.8) 		1.2
(-3) 		1.8
(-3) 		120.3
(3) 		29.6
(-1.6) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184416_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.196
Sequence Type Exemplar sequence
Representative Public ID W03F11.1 NCBI
Target Description W03F11.1 /REP_DB=WormBase Gene ID /WP=CE14542 /TR=O01780 /GB=AAK18984.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058541(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058541 NCBI Caenorhabditis elegans W03F11.1 (W03F11.1) mRNA, complete cds. 11/11 None
SNAP00000024823 ENSEMBL cdna:SNAP chromosome:CEL140:I:2215542:2234847:-1 11/11 None
GENEFINDER00000024832 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2219547:2222294:-1 11/11 None
W03F11.1 ENSEMBL cdna:known chromosome:CEL140:I:2219487:2222310:-1 gene:W03F11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2219546-2222294(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03F11.1
Entrez Gene 171778 Entrez gene
SwissProt O01780 EMBL-EBI
WormBase CE14542 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6030 chitin metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8061 chitin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE60309 Hypothetical protein CBG03898 [Caenorhabditis briggsae] 0.0
blast CAE60828 Hypothetical protein CBG04537 [Caenorhabditis briggsae] 0.0
blast CAB07591 Hypothetical protein F21H7.9 [Caenorhabditis elegans] ref|NP_507101.1| Guanylyl CYclase family member (gcy-20) [Caenorhabditis elegans] 0.0
blast AAK18984 Hypothetical protein W03F11.1 [Caenorhabditis elegans] ref|NP_490942.1| W03F11.1 [Caenorhabditis elegans] 1.0E-120
blast CAE60308 Hypothetical protein CBG03897 [Caenorhabditis briggsae] 1.0E-52
blast CAE60317 Hypothetical protein CBG03908 [Caenorhabditis briggsae] 3.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.0E-13
Pfam IPR000719 EMBL-EBI Protein kinase 0.018
Pfam IPR000719 EMBL-EBI Protein kinase 1.0E-13
Pfam IPR001054 EMBL-EBI Guanylate cyclase 2.1E-86
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.0E-13
Pfam IPR001828 EMBL-EBI Extracellular ligand-binding receptor 6.8E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000024823 2 602-624,760-782
Sequence
Target Sequence 
>C. ELEGANS:184416_S_AT
tgagggtgggcggtggattgttgtaacttgtcagattaactatttttatgatgctacaac
tggcttctgctacctgtcccgattcccaactacccgtccttacccaccaccattcccgac
tcgcccccgaccaactcagggccaccgctgctaccctggcactagaatcccgtacccaca
tgaccataccatgttcctcgagtgttcaactgatggaacagagtatattaaaagatattg
ccagcctgatgcggttttcgtgcaacgggagaacatgtgtgtggccattcagaccacgta
ccgcccgacgagaacatggccgacgactacaactactccatactatggtgcatgcaagga
atctgccggtcatgatgggtataagccggatgtttacaattgcaagaatttctatcagtg
tgcttcaggcctctggacccaacgtagctgcggagaagggaccatctgggaccagcacaa
gctgacgtgcgaccacaaccgtggtcagtgccgtccaacaagcccaaccgttcagccgac
gtatcaaccaacatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGGGTGGGCGGTGGATTGTTGTA 647 551 126 Antisense
ACCATGTTCCTCGAGTGTTCAACTG 702 85 313 Antisense
GATATTGCCAGCCTGATGCGGTTTT 544 427 359 Antisense
GTGTGTGGCCATTCAGACCACGTAC 434 487 402 Antisense
TACCGCCCGACGAGAACATGGCCGA 460 639 424 Antisense
ACGACTACAACTACTCCATACTATG 196 93 448 Antisense
GGAATCTGCCGGTCATGATGGGTAT 218 533 483 Antisense
ATTTCTATCAGTGTGCTTCAGGCCT 88 17 533 Antisense
GAAGGGACCATCTGGGACCAGCACA 480 333 580 Antisense
GACCAGCACAAGCTGACGTGCGACC 211 383 595 Antisense
TTCAGCCGACGTATCAACCAACATG 67 687 656 Antisense
Sequence Source Affymetrix Proprietary Database