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[184415_at]

Description R05D8.11 /REP_DB=WormBase Gene ID /WP=CE23893 /TR=Q9N5F7 /GB=AAF39951.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 31.3
(-2.1)
A 		24.3
(-3)
A 		33
(-1.9)
A 		73.4
(3)
A 		49
B 45.4
(0.8)
A 		60.3
(3)
A 		50.2
(1.5)
A 		19.7
(-3)
A 		41
C 66.6
(3)
A 		53.4
(-0)
A 		40.6
(-3)
A 		52.2
(-0.3)
A 		26
avr 47.8
(2.5) 		46
(1) 		41.3
(-3) 		48.4
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 80.4
(3)
A 		5.6
(-3)
A 		44
(0.1)
A 		26
(-1.4)
A 		59.9
(1.4)
P 		58.4
(1.2)
A 		75
B 56.1
(2.6)
A 		32.1
(0)
A 		59.7
(3)
A 		45.2
(1.4)
A 		14.8
(-1.8)
A 		3.8
(-3)
A 		56
C 39.3
(1.1)
P 		35
(0.5)
A 		10.3
(-3)
A 		50.1
(2.6)
A 		37.1
(0.8)
A 		52.9
(3)
A 		43
avr 58.6
(3) 		24.2
(-3) 		38
(-0.6) 		40.4
(-0.2) 		37.3
(-0.7) 		38.4
(-0.5) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 11.4
(3)
A 		5.3
(-3)
A 		8.6
(0.2)
A 		10.7
(2.3)
A 		6
B 14.5
(2.8)
A 		14.9
(3)
A 		11.6
(1.1)
A 		4.2
(-3)
A 		11
C 22.1
(3)
A 		15.3
(-0.1)
A 		14.2
(-0.6)
A 		8.8
(-3)
A 		13
avr 16
(3) 		11.8
(-0.1) 		11.5
(-0.3) 		7.9
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 14.8
(1.8)
A 		2
(-3)
A 		9.6
(-0.2)
A 		6.6
(-1.3)
A 		18.1
(3)
P 		14.2
(1.5)
A 		16
B 19.5
(3)
A 		10.7
(0.1)
A 		14.5
(1.3)
A 		12
(0.5)
A 		6
(-1.5)
A 		1.4
(-3)
A 		18
C 14.6
(1.8)
P 		10.7
(0.2)
A 		2.6
(-3)
A 		10.1
(-0)
A 		12
(0.7)
A 		17.7
(3)
A 		15
avr 16.3
(3) 		7.8
(-3) 		8.9
(-2.2) 		9.6
(-1.7) 		12
(-0) 		11.1
(-0.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184415_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14935
Sequence Type Exemplar sequence
Representative Public ID R05D8.11 NCBI
Target Description R05D8.11 /REP_DB=WormBase Gene ID /WP=CE23893 /TR=Q9N5F7 /GB=AAF39951.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071356(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071356 NCBI Caenorhabditis elegans R05D8.11 (R05D8.11) mRNA, complete cds. 11/11 None
R05D8.11 ENSEMBL cdna:known chromosome:CEL140:V:2779269:2780672:-1 gene:R05D8.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2779268-2780672(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05D8.11
Entrez Gene 187610 Entrez gene
SwissProt Q9N5F7 EMBL-EBI
WormBase CE23893 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503757 R05D8.11 [Caenorhabditis elegans] gb|AAF39951.1| Hypothetical protein R05D8.11 [Caenorhabditis elegans] 3.0E-95
blast AAC26270 Hypothetical protein F16G10.2 [Caenorhabditis elegans] ref|NP_494259.1| F16G10.2 [Caenorhabditis elegans] 7.0E-21
blast AAF16621 Hypothetical protein F43C11.11 [Caenorhabditis elegans] ref|NP_494254.1| F43C11.11 [Caenorhabditis elegans] 8.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 1.1E-4
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 9.8E-16
Sequence
Target Sequence 
>C. ELEGANS:184415_AT
cccgatgacgttcatattcctgcacctgacaatgaggaagaattgacaacaacaccggaa
atagaaacctcgactgtgacggaaaaagtctgcttcgacaccaaaaacgccgagtgttcc
gaaacactggaatcgttatatttcggtggtgatcttggtgatgatgcaattcattacgtg
tttgttaaaaaagatggctgtcctgtcttacagtgtcccgaaaatgaatttccaattcca
agagttaaagatagtacaggagctacccaatttgatttgttttacgcggcgcctccaaag
acaactgaagaattttcgatgacgacagtaacggatttttttggaatcatatgcgaggac
tccaagtggaagctgactaaattgccgcatggaattatctcacaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCGATGACGTTCATATTCCTGCAC 590 259 88 Antisense
ATAGAAACCTCGACTGTGACGGAAA 24 23 148 Antisense
AGTCTGCTTCGACACCAAAAACGCC 409 45 174 Antisense
ATATTTCGGTGGTGATCTTGGTGAT 562 17 225 Antisense
AAAGATGGCTGTCCTGTCTTACAGT 273 121 277 Antisense
CCTGTCTTACAGTGTCCCGAAAATG 397 195 289 Antisense
AGTACAGGAGCTACCCAATTTGATT 690 61 340 Antisense
CAATTTGATTTGTTTTACGCGGCGC 231 181 355 Antisense
GGCGCCTCCAAAGACAACTGAAGAA 198 541 375 Antisense
GGAAGCTGACTAAATTGCCGCATGG 541 529 455 Antisense
TGCCGCATGGAATTATCTCACAACC 598 585 470 Antisense
Sequence Source Affymetrix Proprietary Database