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[184414_at]

Description Y46H3A.1 /REP_DB=WormBase Gene ID /WP=CE24306 /TR=Q9N4W8 /GB=AAF60617.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 21      6grp_cgc > 05      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 176.7
(2.4)
P 		95.3
(-2.5)
A 		86.9
(-3)
A 		187.2
(3)
P 		100
B 116.8
(0.2)
P 		108
(-0.1)
P 		37.1
(-3)
A 		185.9
(3)
P 		149
C 150.5
(2.2)
P 		117.3
(0.5)
A 		49.6
(-3)
A 		165.9
(3)
P 		116
avr 148
(1.4) 		106.9
(-0.6) 		57.9
(-3) 		179.7
(3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 130.9
(3)
P 		84.3
(0.5)
P 		47.7
(-1.5)
A 		67.4
(-0.4)
A 		19.4
(-3)
A 		43.1
(-1.7)
A 		112
B 87.1
(3)
P 		78
(2.4)
P 		63.1
(1.3)
A 		3
(-3)
A 		51.8
(0.5)
A 		47.4
(0.2)
A 		84
C 91.5
(2.5)
P 		100.1
(3)
P 		35.7
(-1)
A 		3.3
(-3)
A 		42.2
(-0.6)
A 		63.9
(0.8)
A 		97
avr 103.2
(3) 		87.5
(1.8) 		48.8
(-1.2) 		24.6
(-3) 		37.8
(-2) 		51.5
(-0.9) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 64.4
(3)
P 		20.7
(-3)
A 		22.7
(-2.7)
A 		27.4
(-2.1)
P 		44
B 37.3
(2.6)
P 		26.7
(0.5)
P 		8.6
(-3)
A 		39.6
(3)
P 		31
C 49.8
(3)
P 		33.7
(0)
A 		17.3
(-3)
A 		28
(-1)
P 		33
avr 50.5
(3) 		27
(-1.1) 		16.2
(-3) 		31.7
(-0.3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 24.1
(1.5)
P 		30
(3)
P 		10.4
(-1.9)
A 		17.1
(-0.2)
A 		5.8
(-3)
A 		10.5
(-1.8)
A 		24
B 30.3
(3)
P 		26
(2.1)
P 		15.3
(-0.1)
A 		0.8
(-3)
A 		21
(1.1)
A 		17.7
(0.4)
A 		30
C 33.9
(3)
P 		30.5
(2.4)
P 		9.1
(-1.5)
A 		0.7
(-3)
A 		13.7
(-0.7)
A 		21.4
(0.7)
A 		33
avr 29.4
(3) 		28.8
(2.8) 		11.6
(-1.6) 		6.2
(-3) 		13.5
(-1.1) 		16.5
(-0.3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184414_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14914
Sequence Type Exemplar sequence
Representative Public ID Y46H3A.1 NCBI
Target Description Y46H3A.1 /REP_DB=WormBase Gene ID /WP=CE24306 /TR=Q9N4W8 /GB=AAF60617.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029074(11), NM_001029073(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029074 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-42) (srt-42) mRNA, complete cds. 11/11 None
NM_001029073 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-42) (srt-42) mRNA, complete cds. 11/11 None
SNAP00000020849 ENSEMBL cdna:SNAP chromosome:CEL140:V:1807941:1809296:1 11/11 None
GENEFINDER00000020857 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1807307:1809296:1 11/11 None
Y46H3A.1b ENSEMBL cdna:known chromosome:CEL140:V:1807307:1809296:1 gene:Y46H3A.1 11/11 None
Y46H3A.1a ENSEMBL cdna:known chromosome:CEL140:V:1807929:1809296:1 gene:Y46H3A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1807928-1809296(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y46H3A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024245 Serpentine Receptor, class T family member (srt-42) [Caenorhabditis elegans] gb|AAW57825.1| Serpentine receptor, class t protein 42, isoform b [Caenorhabditis elegans] 0.0
blast NP_001024245 Serpentine Receptor, class T family member (srt-42) [Caenorhabditis elegans] gb|AAW57825.1| Serpentine receptor, class t protein 42, isoform b [Caenorhabditis elegans] 1.0E-171
blast NP_001024244 Serpentine Receptor, class T family member (srt-42) [Caenorhabditis elegans] gb|AAF60617.2| Serpentine receptor, class t protein 42, isoform a [Caenorhabditis elegans] 1.0E-169
blast NP_503506 Serpentine Receptor, class T family member (srt-41) [Caenorhabditis elegans] 1.0E-168
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024245.1 7 41-63,75-97,112-134,155-177,209-226,246-268,283-305
NP_001024244.1 7 13-35,48-70,85-107,128-150,182-199,219-241,256-278
Y46H3A.1b 7 41-63,75-97,112-134,155-177,209-226,246-268,283-305
Y46H3A.1a 7 13-35,48-70,85-107,128-150,182-199,219-241,256-278
SNAP00000020849 7 10-32,44-66,81-103,124-146,178-195,215-237,252-274
GENEFINDER00000020857 7 41-63,75-97,112-134,155-177,209-226,246-268,283-305
Sequence
Target Sequence 
>C. ELEGANS:184414_AT
aacttgtgttctactaatcccgattgcttatggcctttactttaccatactgaccccacc
attgctcttcacatcgagataccaagcatggttctttgatccattcatctatcaaaacaa
gacacttgagtaccaaaactatccacataccgccaacaacctgtttatcgtggttgccac
gtgtgctctttatggatacttttgcgctgcgatctctaagcaattcaggaaaaggctgga
gtcaactaacaagaaatctcatgctcagatcttcctccaatccaccctcatctgcatggc
caacttcattgctgcaatggtctacgtctacatgcaattcttcccggtcgccgacttcgt
cattgtcatcggtcacatgtcctggcagcttggacacggatgcccagcgatcatctacct
cttcatgaacaccaccattcgtagcggagtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTGTGTTCTACTAATCCCGATT 295 139 396 Antisense
GATTGCTTATGGCCTTTACTTTACC 537 433 417 Antisense
CATACCGCCAACAACCTGTTTATCG 315 213 541 Antisense
GATACTTTTGCGCTGCGATCTCTAA 244 423 590 Antisense
GAAATCTCATGCTCAGATCTTCCTC 612 361 648 Antisense
GCATGGCCAACTTCATTGCTGCAAT 351 311 689 Antisense
GCTGCAATGGTCTACGTCTACATGC 518 295 706 Antisense
GACTTCGTCATTGTCATCGGTCACA 558 369 748 Antisense
GGTCACATGTCCTGGCAGCTTGGAC 595 503 766 Antisense
TCATCTACCTCTTCATGAACACCAC 455 621 806 Antisense
AACACCACCATTCGTAGCGGAGTCT 137 135 823 Antisense
Sequence Source Affymetrix Proprietary Database