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[184413_at]

Description Y23H5A.3 /REP_DB=WormBase Gene ID /WP=CE18359 /TR=O76616 /GB=AAC64630.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 16      4grp_high_8_8 > 61      6grp_highest_nonorm > 93      6grp_total > 99      4grp_total > 59      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 332
1 2 3 4 range
A 545.8
(0.5)
P 		681.3
(3)
P 		647.4
(2.4)
P 		349.6
(-3)
P 		332
B 535.2
(0.4)
P 		590.4
(1.6)
P 		655.3
(3)
P 		373.9
(-3)
P 		281
C 542.7
(0.5)
P 		658.9
(3)
P 		648
(2.8)
P 		377.6
(-3)
P 		281
avr 541.2
(0.7) 		643.5
(2.9) 		650.2
(3) 		367
(-3) 		283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 524
1 2 3 4 5 6 range
A 331.1
(-2.6)
P 		329.7
(-2.7)
P 		312.7
(-3)
P 		347.1
(-2.3)
P 		626.9
(3)
P 		592.1
(2.3)
P 		314
B 453.9
(-0.8)
P 		264.1
(-3)
P 		361.5
(-1.9)
P 		373.3
(-1.7)
P 		684.5
(1.8)
P 		788
(3)
P 		524
C 498.8
(0.3)
P 		320.8
(-2.4)
P 		304.5
(-2.7)
P 		282.2
(-3)
P 		681.3
(3)
P 		662.8
(2.7)
P 		399
avr 427.9
(-1) 		304.9
(-3) 		326.2
(-2.7) 		334.2
(-2.5) 		664.2
(2.7) 		681
(3) 		376
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 198.7
(3)
P 		147.9
(0.9)
P 		169.2
(1.8)
P 		51.2
(-3)
P 		148
B 170.7
(3)
P 		145.8
(1.4)
P 		151.8
(1.8)
P 		79.7
(-3)
P 		91
C 179.7
(1.3)
P 		189.5
(1.7)
P 		225.8
(3)
P 		63.7
(-3)
P 		162
avr 183
(3) 		161.1
(1.9) 		182.3
(3) 		64.9
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 61
(-3)
P 		117.3
(-0.4)
P 		68.1
(-2.7)
P 		88
(-1.7)
P 		189.2
(3)
P 		144.2
(0.9)
P 		128
B 157.9
(-1)
P 		87.9
(-3)
P 		87.8
(-3)
P 		98.9
(-2.7)
P 		278.1
(2.5)
P 		293.8
(3)
P 		206
C 184.9
(1.7)
P 		97.9
(-1.5)
P 		77.5
(-2.2)
P 		56.8
(-3)
P 		220.5
(2.9)
P 		221.9
(3)
P 		165
avr 134.6
(-0.8) 		101
(-2.1) 		77.8
(-3) 		81.2
(-2.9) 		229.3
(3) 		220
(2.6) 		152
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184413_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.57
Sequence Type Exemplar sequence
Representative Public ID Y23H5A.3 NCBI
Target Description Y23H5A.3 /REP_DB=WormBase Gene ID /WP=CE18359 /TR=O76616 /GB=AAC64630.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058610(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058610 NCBI Caenorhabditis elegans Y23H5A.3 (Y23H5A.3) mRNA, complete cds. 11/11 None
SNAP00000016936 ENSEMBL cdna:SNAP chromosome:CEL140:I:2620660:2621735:1 11/11 None
GENEFINDER00000016950 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2620660:2621735:1 11/11 None
Y23H5A.3 ENSEMBL cdna:known chromosome:CEL140:I:2620660:2621847:1 gene:Y23H5A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2620659-2621735(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y23H5A.3
Entrez Gene 171819 Entrez gene
SwissProt O76616 EMBL-EBI
WormBase CE18359 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491011 Y23H5A.3 [Caenorhabditis elegans] gb|AAC64630.1| Hypothetical protein Y23H5A.3 [Caenorhabditis elegans] 1.0E-169
blast CAE69000 Hypothetical protein CBG14989 [Caenorhabditis briggsae] 1.0E-132
Sequence
Target Sequence 
>C. ELEGANS:184413_AT
tggcgtcgagatacggattcgtccgtcagggattgctctacgataactgtgccaatcgtt
tccaaaatgtggaaaccgatcagaatagcgtgttccggaacatgtgccaatggatttatc
gtagcggcaccgcgattgtgagaaatgagggaaacgcgtgtggaattctccatggaaaag
atccgaaaccgacgttcgacaaggttctcttcaacagcgaagacatcaaggattccgttt
tcaaagttcttcacgccgaagaagagccgagaggtgcggatcaggagaacatgctgaaga
tcagtggatatccggggatgctcaacacgttcggcatcgcacaacttctcaccccatatc
gtgtcaatgggatcaccatcaccggcgcccagtcggccgtcgttgccctggagaacaagt
ttcaagtctatcaggccgtgcaggatttcaacgggaagaagctcgatcgcaatcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCGTCGAGATACGGATTCGTCCG 184 545 332 Antisense
CGTCCGTCAGGGATTGCTCTACGAT 638 217 351 Antisense
GATAACTGTGCCAATCGTTTCCAAA 319 423 373 Antisense
AATGGATTTATCGTAGCGGCACCGC 376 163 440 Antisense
GGGAAACGCGTGTGGAATTCTCCAT 549 493 480 Antisense
GACGTTCGACAAGGTTCTCTTCAAC 229 377 522 Antisense
ATATCCGGGGATGCTCAACACGTTC 461 21 639 Antisense
GTGTCAATGGGATCACCATCACCGG 96 487 692 Antisense
CCGTCGTTGCCCTGGAGAACAAGTT 353 263 728 Antisense
AAGTTTCAAGTCTATCAGGCCGTGC 255 157 748 Antisense
GGGAAGAAGCTCGATCGCAATCACA 51 495 784 Antisense
Sequence Source Affymetrix Proprietary Database