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[184412_at]

Description Y57G7A.9 /REP_DB=WormBase Gene ID /WP=CE19638 /TR=O76629 /GB=AAC26293.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 39      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 51.5
(3)
A 		9
(-2.7)
A 		6.9
(-3)
A 		15
(-1.9)
A 		45
B 42.8
(3)
A 		4.2
(-2.8)
A 		2.7
(-3)
A 		2.7
(-3)
A 		40
C 51.9
(3)
A 		5.3
(-3)
A 		5.7
(-2.9)
A 		21.1
(-1)
A 		47
avr 48.7
(3) 		6.2
(-2.8) 		5.1
(-3) 		12.9
(-1.9) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 3.3
(-3)
A 		15.1
(0.4)
A 		24.2
(3)
A 		5.1
(-2.5)
A 		9.4
(-1.2)
A 		8.2
(-1.6)
A 		21
B 21
(2.8)
A 		21.5
(3)
A 		4.6
(-2.3)
A 		6.7
(-1.6)
A 		2.5
(-2.9)
A 		2.2
(-3)
A 		19
C 24.8
(3)
A 		22.4
(2.4)
A 		3.4
(-2.8)
A 		16.2
(0.7)
A 		2.6
(-3)
A 		6.4
(-2)
A 		22
avr 16.4
(1.7) 		19.7
(3) 		10.7
(-0.6) 		9.3
(-1.2) 		4.8
(-3) 		5.6
(-2.7) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 18.8
(3)
A 		1.9
(-3)
A 		1.8
(-3)
A 		2.2
(-2.9)
A 		17
B 13.6
(3)
A 		1
(-2.8)
A 		0.6
(-3)
A 		0.6
(-3)
A 		13
C 17.2
(3)
A 		1.5
(-3)
A 		2
(-2.8)
A 		3.6
(-2.2)
A 		16
avr 16.5
(3) 		1.5
(-3) 		1.5
(-3) 		2.1
(-2.8) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.6
(-3)
A 		5.4
(3)
A 		5.3
(2.9)
A 		1.3
(-2.1)
A 		2.8
(-0.3)
A 		2
(-1.3)
A 		5
B 7.3
(3)
A 		7.2
(2.9)
A 		1.1
(-2.7)
A 		1.8
(-2.1)
A 		1
(-2.8)
A 		0.8
(-3)
A 		7
C 9.2
(3)
A 		6.8
(1.3)
A 		0.9
(-2.9)
A 		3.3
(-1.2)
A 		0.8
(-3)
A 		2.1
(-2.1)
A 		8
avr 5.7
(2) 		6.5
(3) 		2.4
(-1.9) 		2.1
(-2.3) 		1.5
(-3) 		1.6
(-2.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184412_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4215
Sequence Type Exemplar sequence
Representative Public ID Y57G7A.9 NCBI
Target Description Y57G7A.9 /REP_DB=WormBase Gene ID /WP=CE19638 /TR=O76629 /GB=AAC26293.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061543(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061543 NCBI Caenorhabditis elegans Y57G7A.9 (Y57G7A.9) mRNA, complete cds. 11/11 None
SNAP00000014159 ENSEMBL cdna:SNAP chromosome:CEL140:II:1300081:1301504:-1 11/11 None
GENEFINDER00000014173 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1300130:1301504:-1 11/11 None
Y57G7A.9 ENSEMBL cdna:known chromosome:CEL140:II:1300081:1301647:-1 gene:Y57G7A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1300079-1301503(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G7A.9
Entrez Gene 190362 Entrez gene
SwissProt O76629 EMBL-EBI
WormBase CE19638 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26293 Hypothetical protein Y57G7A.9 [Caenorhabditis elegans] ref|NP_493944.1| Y57G7A.9 [Caenorhabditis elegans] 2.0E-95
blast CAE62918 Hypothetical protein CBG07112 [Caenorhabditis briggsae] 2.0E-84
blast AAC26293 Hypothetical protein Y57G7A.9 [Caenorhabditis elegans] ref|NP_493944.1| Y57G7A.9 [Caenorhabditis elegans] 6.0E-62
blast CAE62918 Hypothetical protein CBG07112 [Caenorhabditis briggsae] 1.0E-55
Sequence
Target Sequence 
>C. ELEGANS:184412_AT
ggcataattttggcgtatttccgacgtcccaagcttgatatcgacagggttcggtcggtc
tggatggatcatatcaatggaaacgatcagtacttccaagaggtaatccatagaatatgc
aagcgaaacgagggaatccggtgtgcaatgctggctccgaacgcgcagcacgccgagtcg
gtggccgaggaggattttgtgctctcaaatattgcagataggatctcacagttttttcat
caattggttgaggatgacgtgcttatggacacggtagaactgaaaaaagcctgctatgac
cttggaagacaacattcttcgtattcgaaacaacaatttaagatgtcctactgggaagag
tttacattgacaatgatgggtgttctggagcaaaactacccggaaaccacgaaagaagag
caaaaagcgtggcttcactttttgagatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCATAATTTTGGCGTATTTCCGAC 509 535 16 Antisense
TTCCGACGTCCCAAGCTTGATATCG 214 697 34 Antisense
GTTCGGTCGGTCTGGATGGATCATA 676 437 64 Antisense
GAAACGATCAGTACTTCCAAGAGGT 458 357 95 Antisense
GGAATCCGGTGTGCAATGCTGGCTC 59 533 148 Antisense
CGCCGAGTCGGTGGCCGAGGAGGAT 488 257 186 Antisense
GGCCGAGGAGGATTTTGTGCTCTCA 331 543 198 Antisense
GCAGATAGGATCTCACAGTTTTTTC 309 313 229 Antisense
GGTTGAGGATGACGTGCTTATGGAC 395 507 261 Antisense
AAAGCCTGCTATGACCTTGGAAGAC 375 125 301 Antisense
GCGTGGCTTCACTTTTTGAGATTTG 87 293 442 Antisense
Sequence Source Affymetrix Proprietary Database