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[184411_at]

Description C12D12.1 /REP_DB=WormBase Gene ID /WP=CE27679 /TR=Q17921 /GB=AAA96080.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 12      6grp_highest_nonorm > 41      6grp_total > 22      4grp_total > 59      6grp_highest_sub > 01_02_03      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1914
1 2 3 4 range
A 1244.8
(0.3)
P 		1895.2
(2.5)
P 		2027.8
(3)
P 		275.5
(-3)
A 		1752
B 1507.7
(0.8)
P 		1803.9
(1.8)
P 		2183.9
(3)
P 		341.7
(-3)
A 		1842
C 1377.2
(1)
P 		1943.9
(3)
P 		1889
(2.8)
P 		269.5
(-3)
A 		1674
avr 1376.6
(0.7) 		1881
(2.5) 		2033.6
(3) 		295.6
(-3) 		1738

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 731
1 2 3 4 5 6 range
A 775.6
(1)
P 		989
(3)
P 		786.9
(1.1)
P 		478.3
(-1.8)
P 		441
(-2.2)
P 		356.3
(-3)
P 		633
B 907.9
(2.9)
P 		844.6
(2.3)
P 		917.1
(3)
P 		632.1
(0.4)
P 		300.8
(-2.6)
P 		257.7
(-3)
P 		659
C 790.6
(1.7)
P 		824.9
(2)
P 		920.9
(3)
P 		488.1
(-1.5)
P 		483.8
(-1.5)
P 		341.6
(-3)
P 		579
avr 824.7
(2.4) 		886.2
(3) 		875
(2.9) 		532.8
(-0.7) 		408.5
(-2) 		318.5
(-3) 		568
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 618
1 2 3 4 range
A 453.2
(2.1)
P 		411.4
(1.5)
P 		530.1
(3)
P 		40.3
(-3)
A 		490
B 480.8
(2.6)
P 		445.5
(2.2)
P 		506.1
(3)
P 		72.8
(-3)
A 		433
C 455.9
(1)
P 		558.9
(2)
P 		658.4
(3)
P 		45.4
(-3)
A 		613
avr 463.3
(1.8) 		471.9
(1.9) 		564.9
(3) 		52.8
(-3) 		512

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 265
1 2 3 4 5 6 range
A 143
(-1.7)
P 		351.8
(3)
P 		171.4
(-1.1)
P 		121.3
(-2.2)
P 		133.1
(-1.9)
P 		86.7
(-3)
P 		265
B 315.9
(3)
P 		281.1
(2.1)
P 		222.7
(0.5)
P 		167.4
(-1.1)
P 		122.2
(-2.3)
P 		96.1
(-3)
P 		220
C 293
(3)
P 		251.7
(1.7)
P 		234.4
(1.2)
P 		98.1
(-3)
P 		156.6
(-1.2)
P 		114.4
(-2.5)
P 		195
avr 250.6
(1.6) 		294.9
(3) 		209.5
(0.4) 		128.9
(-2.1) 		137.3
(-1.8) 		99.1
(-3) 		196
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184411_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18497
Sequence Type Exemplar sequence
Representative Public ID C12D12.1 NCBI
Target Description C12D12.1 /REP_DB=WormBase Gene ID /WP=CE27679 /TR=Q17921 /GB=AAA96080.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076202(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076202 NCBI Caenorhabditis elegans C12D12.1a (C12D12.1) mRNA, complete cds. 11/11 None
SNAP00000040497 ENSEMBL cdna:SNAP chromosome:CEL140:X:3501243:3505090:1 11/11 None
GENEFINDER00000040503 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3501243:3505090:1 11/11 None
C12D12.1a ENSEMBL cdna:known chromosome:CEL140:X:3501155:3505226:1 gene:C12D12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076201 1/11 Cross Hyb Matching Probes None
C12D12.1b 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180642 2 1 NM_076202 184411_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3501243-3505091(+) 93.54 100.0
Public Domain and Genome References
Ensembl C12D12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96080 Hypothetical protein C12D12.1a [Caenorhabditis elegans] ref|NP_508603.1| C12D12.1a [Caenorhabditis elegans] 0.0
blast AAL00856 Hypothetical protein C12D12.1b [Caenorhabditis elegans] ref|NP_508602.1| C12D12.1b [Caenorhabditis elegans] 0.0
blast CAE68440 Hypothetical protein CBG14225 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:184411_AT
ccaccagttacaacgacttctcttttaacaacactcacaactccaacagtccccgttaca
acaactgtagtcccaagtagcgcaacagtacctaccacgcctccaactactgtaactgta
gcagctacaactacctctaaggcccccgtagtaacaactagtcctaccttagccccaact
tcgccgactaaattgcctacatcaccaccaagtaccgtcggaacttcaccaacggctcct
gcaaatctaacaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCAGTTACAACGACTTCTCTTT 27 275 1870 Antisense
CGACTTCTCTTTTAACAACACTCAC 184 253 1883 Antisense
CCAACAGTCCCCGTTACAACAACTG 217 273 1912 Antisense
AACAACTGTAGTCCCAAGTAGCGCA 517 131 1929 Antisense
AAGTAGCGCAACAGTACCTACCACG 366 153 1944 Antisense
ACGCCTCCAACTACTGTAACTGTAG 138 91 1966 Antisense
TAGCAGCTACAACTACCTCTAAGGC 655 651 1988 Antisense
TAGTAACAACTAGTCCTACCTTAGC 40 503 2018 Antisense
CTTCGCCGACTAAATTGCCTACATC 85 221 2048 Antisense
TACCGTCGGAACTTCACCAACGGCT 502 617 2082 Antisense
AACGGCTCCTGCAAATCTAACAACT 526 143 2100 Antisense
Sequence Source Affymetrix Proprietary Database