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[184410_at]

Description C35D10.5 /REP_DB=WormBase Gene ID /WP=CE01199 /TR=Q18485 /GB=AAA62561.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 73      4grp_highest_8_8 > 08      4grp_high_8_8 > 53      6grp_highest_nonorm > 81      6grp_total > 74      4grp_total > 51      6grp_high1_sub > 03_04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 288.6
(-1.5)
P 		415.1
(3)
P 		319.5
(-0.4)
P 		245.3
(-3)
P 		170
B 264.4
(-0.3)
P 		328
(2.6)
P 		335.7
(3)
P 		206.5
(-3)
P 		129
C 322.8
(0.8)
P 		377.1
(3)
P 		371.6
(2.8)
P 		226
(-3)
P 		151
avr 291.9
(-0.3) 		373.4
(3) 		342.3
(1.7) 		225.9
(-3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 295.8
(-0.3)
P 		283.7
(-3)
P 		310.4
(3)
P 		296.3
(-0.2)
P 		285.3
(-2.6)
P 		309.8
(2.9)
P 		27
B 275.3
(-1)
P 		244.9
(-3)
P 		337.3
(3)
P 		287.5
(-0.2)
P 		247.6
(-2.8)
P 		334.9
(2.8)
P 		92
C 289.6
(-2)
P 		290.8
(-2)
P 		279.5
(-2.4)
P 		442.1
(3)
P 		260.8
(-3)
P 		321.3
(-1)
P 		181
avr 286.9
(-1.3) 		273.1
(-2.3) 		309.1
(0.4) 		342
(3) 		264.6
(-3) 		322
(1.4) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 105.1
(3)
P 		90.1
(1.7)
P 		83.5
(1.1)
P 		35.9
(-3)
P 		69
B 84.3
(3)
P 		81
(2.5)
P 		77.8
(2)
P 		44
(-3)
P 		40
C 106.9
(1.5)
P 		108.4
(1.6)
P 		129.5
(3)
P 		38.1
(-3)
P 		91
avr 98.8
(3) 		93.2
(2.4) 		96.9
(2.8) 		39.3
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 54.5
(-3)
P 		100.9
(3)
P 		67.6
(-1.3)
P 		75.1
(-0.3)
P 		86.1
(1.1)
P 		75.4
(-0.3)
P 		46
B 95.8
(-0.6)
P 		81.5
(-2.3)
P 		81.9
(-2.3)
P 		76.2
(-3)
P 		100.6
(0)
P 		124.9
(3)
P 		49
C 107.3
(3)
P 		88.7
(-0.1)
P 		71.1
(-3)
P 		88.9
(-0.1)
P 		84.4
(-0.8)
P 		107.6
(3)
P 		37
avr 85.9
(-0.4) 		90.4
(0.5) 		73.5
(-3) 		80.1
(-1.6) 		90.4
(0.5) 		102.6
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184410_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7065
Sequence Type Exemplar sequence
Representative Public ID C35D10.5 NCBI
Target Description C35D10.5 /REP_DB=WormBase Gene ID /WP=CE01199 /TR=Q18485 /GB=AAA62561.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065612(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065612 NCBI Caenorhabditis elegans C35D10.5 (C35D10.5) mRNA, complete cds. 11/11 None
SNAP00000029546 ENSEMBL cdna:SNAP chromosome:CEL140:III:4862313:4863236:1 11/11 None
GENEFINDER00000029571 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4862313:4863236:1 11/11 None
C35D10.5 ENSEMBL cdna:known chromosome:CEL140:III:4862519:4863236:1 gene:C35D10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4862518-4863236(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35D10.5
Entrez Gene 183238 Entrez gene
SwissProt Q18485 EMBL-EBI
WormBase CE01199 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE71105 Hypothetical protein CBG17958 [Caenorhabditis briggsae] 1.0E-126
blast NP_498013 C35D10.5 [Caenorhabditis elegans] gb|AAA62561.1| Hypothetical protein C35D10.5 [Caenorhabditis elegans] 1.0E-109
blast CAE71105 Hypothetical protein CBG17958 [Caenorhabditis briggsae] 1.0E-106
blast AAH86302 Hypothetical protein MGC76279 [Xenopus tropicalis] gb|AAH64265.1| Hypothetical protein MGC76279 [Xenopus tropicalis] ref|NP_989308.1| hypothetical protein LOC394930 [Xenopus tropicalis] 2.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR007129 EMBL-EBI Ubiquinol-cytochrome C chaperone 3.7E-95
Pfam IPR007129 EMBL-EBI Ubiquinol-cytochrome C chaperone 3.7E-95
Sequence
Target Sequence 
>C. ELEGANS:184410_AT
agtccgacggtcttgatcaatcagtgaaatctattcttgaccgcgcatcagctcaacttt
attacaattgtgcagataattatgatttcgcaaagctctgtgaggcatttggacttggag
attatatgtcttcgtggtacaagttgacactaatgcatacatggatggtattgatgagac
ttcattcagaatttgatggaaaagcatacatgagattacagcgaggtcttttatcaacaa
tgtggctggatattgataataggctaggaattgtgagcaaagagttgaatcaaattatga
cggggcaaaatgatatgaagcacatgcacggattacatttgcagacgtttttcgaatatg
acgagggattcctccacgatgaccgtgttcttgctggtgccatttggagatgcttataca
tgaatcgagaagttgatccaattcatttgctgaaagttgtgacatatatgagatctacag
ttgcttggttggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCCGACGGTCTTGATCAATCAGT 567 59 23 Antisense
AGTGAAATCTATTCTTGACCGCGCA 626 59 45 Antisense
CGCGCATCAGCTCAACTTTATTACA 192 255 64 Antisense
AGCTCTGTGAGGCATTTGGACTTGG 139 81 116 Antisense
GGAGATTATATGTCTTCGTGGTACA 424 517 139 Antisense
ATTACAGCGAGGTCTTTTATCAACA 336 13 237 Antisense
GAAGCACATGCACGGATTACATTTG 197 341 339 Antisense
ATATGACGAGGGATTCCTCCACGAT 512 21 378 Antisense
TCCTCCACGATGACCGTGTTCTTGC 538 593 392 Antisense
TGTTCTTGCTGGTGCCATTTGGAGA 137 561 408 Antisense
GAGATCTACAGTTGCTTGGTTGGAA 130 397 492 Antisense
Sequence Source Affymetrix Proprietary Database