[Home] | [Total List]

[184407_at]

Description Y48B6A.10 /REP_DB=WormBase Gene ID /WP=CE22125 /TR=Q9U2A2 /GB=CAB54446.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 31.7
(-3)
A 		73.5
(2.1)
A 		44.9
(-1.4)
A 		81.1
(3)
A 		49
B 45.8
(-0.3)
A 		66.2
(2.7)
A 		27.5
(-3)
A 		68.5
(3)
A 		41
C 65.2
(0.5)
A 		56.1
(-0.4)
A 		31.6
(-3)
A 		89.1
(3)
A 		58
avr 47.6
(-1.3) 		65.3
(1.1) 		34.7
(-3) 		79.6
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 43.1
(-0.7)
A 		42.2
(-0.8)
A 		29.8
(-3)
A 		31.5
(-2.7)
A 		33.2
(-2.4)
A 		63.8
(3)
A 		34
B 23.6
(-1.3)
A 		7.4
(-2.9)
A 		68.3
(3)
A 		6.1
(-3)
A 		51.4
(1.4)
A 		30
(-0.7)
A 		62
C 22.9
(-3)
A 		66.8
(3)
A 		29.1
(-2.2)
A 		44.2
(-0.1)
A 		27.5
(-2.4)
A 		37.2
(-1)
A 		44
avr 29.9
(-2) 		38.8
(1.2) 		42.4
(2.5) 		27.3
(-3) 		37.4
(0.7) 		43.7
(3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 11.5
(-3)
A 		16
(3)
A 		11.7
(-2.7)
A 		11.9
(-2.5)
A 		5
B 14.6
(1.9)
A 		16.4
(3)
A 		6.4
(-3)
A 		14.6
(1.9)
A 		10
C 21.6
(3)
A 		16.1
(-0.1)
A 		11
(-3)
A 		15
(-0.7)
A 		11
avr 15.9
(2.7) 		16.2
(3) 		9.7
(-3) 		13.8
(0.8) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 7.9
(-2.1)
A 		15
(2.7)
A 		6.5
(-3)
A 		8
(-2)
A 		10
(-0.7)
A 		15.5
(3)
A 		9
B 8.2
(-0.9)
A 		2.5
(-2.7)
A 		16.6
(1.7)
A 		1.6
(-3)
A 		20.9
(3)
A 		11.2
(-0)
A 		19
C 8.5
(-2.5)
A 		20.4
(3)
A 		7.4
(-3)
A 		8.9
(-2.3)
A 		8.9
(-2.3)
A 		12.4
(-0.7)
A 		13
avr 8.2
(-1.3) 		12.6
(2.4) 		10.2
(0.4) 		6.2
(-3) 		13.3
(3) 		13
(2.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184407_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2622
Sequence Type Exemplar sequence
Representative Public ID Y48B6A.10 NCBI
Target Description Y48B6A.10 /REP_DB=WormBase Gene ID /WP=CE22125 /TR=Q9U2A2 /GB=CAB54446.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064564(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064564 NCBI Caenorhabditis elegans Y48B6A.10 (Y48B6A.10) mRNA, complete cds. 11/11 None
SNAP00000022965 ENSEMBL cdna:SNAP chromosome:CEL140:II:14214300:14216678:1 11/11 None
GENEFINDER00000022985 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14214300:14216678:1 11/11 None
Y48B6A.10 ENSEMBL cdna:known chromosome:CEL140:II:14214300:14216678:1 gene:Y48B6A.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14214296-14216675(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48B6A.10
Entrez Gene 175077 Entrez gene
SwissProt Q9U2A2 EMBL-EBI
WormBase CE22125 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54446 Hypothetical protein Y48B6A.10 [Caenorhabditis elegans] ref|NP_496965.1| Y48B6A.10 [Caenorhabditis elegans] 0.0
blast CAA94675 Hypothetical protein C04G2.10 [Caenorhabditis elegans] ref|NP_501839.1| C04G2.10 [Caenorhabditis elegans] 3.0E-24
blast CAA98255 Hypothetical protein C50H2.7 [Caenorhabditis elegans] ref|NP_505555.1| C50H2.7 [Caenorhabditis elegans] 6.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496965.1 1 21-43
Y48B6A.10 1 21-43
SNAP00000022965 1 21-43
GENEFINDER00000022985 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:184407_AT
ccttccaggaagtggctgctctgaatcgtctcggtgatgtggcccatcaaacgcccaatc
ttgtgaagtttgagatggcggctgtggtaactggaatgccacaagacgtcaaaaaccagc
tgcgagaaaactggcggacaaatcacatgctggttgtgattctgtcaagaggagggagac
cggtggccagccaaccacctgattcgttgacggcccagcaatccatcggaatcatgaagc
agttcgtgatgacgatgttgatcggagagacaagcttgaagttgtatcacaacgacgccc
attgtcggaacgtgctcctcaccgacaccgacgacgagtacctggagtacaagccggatg
gaggagccgtcaaggtcaagtcgtacgaaaagaagctgacgatcatcgacttcggagagg
ccaccttcgatgttcccaatccgcggaagtggccttcgcatcgattcgtctcccgtctcg
ccgacttcttgatccgacgaacaaccgaagatacgcgttattacgtcgagcgtgccttaa
gccagtgtag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTTCCAGGAAGTGGCTGCTCTGAA 161 269 698 Antisense
TGCTCTGAATCGTCTCGGTGATGTG 531 579 714 Antisense
CCCATCAAACGCCCAATCTTGTGAA 208 259 740 Antisense
GATGGCGGCTGTGGTAACTGGAATG 419 405 771 Antisense
ACTGGCGGACAAATCACATGCTGGT 352 97 827 Antisense
GCCAACCACCTGATTCGTTGACGGC 497 277 887 Antisense
CGACGCCCATTGTCGGAACGTGCTC 523 249 990 Antisense
GGAGGAGCCGTCAAGGTCAAGTCGT 234 497 1057 Antisense
GATCATCGACTTCGGAGAGGCCACC 43 419 1098 Antisense
CCGACTTCTTGATCCGACGAACAAC 154 263 1178 Antisense
TCGAGCGTGCCTTAAGCCAGTGTAG 625 599 1223 Antisense
Sequence Source Affymetrix Proprietary Database