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[184405_at]

Description F22H10.4 /REP_DB=WormBase Gene ID /WP=CE09573 /TR=Q94190 /GB=AAB09101.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 44
(-3)
A 		45.8
(-2.5)
A 		59
(1.6)
A 		63.7
(3)
P 		20
B 37.6
(0.2)
A 		48.3
(3)
A 		40.2
(0.9)
A 		25.4
(-3)
A 		23
C 35.6
(-1.8)
A 		7.9
(-3)
A 		40.1
(-1.6)
A 		148.9
(3)
P 		141
avr 39.1
(-2.3) 		34
(-3) 		46.4
(-1.4) 		79.3
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 51.9
(1.8)
A 		7.6
(-3)
A 		47.7
(1.4)
A 		62.5
(3)
A 		19.1
(-1.7)
A 		24.1
(-1.2)
A 		55
B 25.9
(1.7)
A 		31.9
(3)
A 		28.3
(2.2)
A 		5
(-2.8)
A 		4
(-3)
A 		26
(1.7)
A 		28
C 5.4
(-3)
A 		46.9
(1.1)
A 		11.8
(-2.4)
A 		65.9
(3)
A 		40.1
(0.4)
A 		14.2
(-2.1)
A 		61
avr 27.7
(-1.3) 		28.8
(-1) 		29.3
(-0.9) 		44.5
(3) 		21.1
(-3) 		21.4
(-2.9) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 16
(3)
A 		9.9
(-2.5)
A 		15.4
(2.5)
A 		9.3
(-3)
P 		7
B 12
(3)
A 		11.9
(2.9)
A 		9.3
(0.5)
A 		5.4
(-3)
A 		7
C 11.8
(-0.5)
A 		2.3
(-3)
A 		14
(0.1)
A 		25.1
(3)
P 		23
avr 13.3
(3) 		8
(-3) 		12.9
(2.5) 		13.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 9.6
(0.1)
A 		2.7
(-3)
A 		10.4
(0.5)
A 		15.9
(3)
A 		5.8
(-1.6)
A 		5.9
(-1.5)
A 		13
B 9
(2)
A 		10.6
(3)
A 		6.9
(0.6)
A 		1.3
(-3)
A 		1.6
(-2.8)
A 		9.7
(2.4)
A 		9
C 2
(-3)
A 		14.3
(3)
A 		3
(-2.5)
A 		13.3
(2.5)
A 		13
(2.4)
A 		4.7
(-1.7)
A 		12
avr 6.9
(-2.8) 		9.2
(1.2) 		6.8
(-3) 		10.2
(3) 		6.8
(-3) 		6.8
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184405_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17659
Sequence Type Exemplar sequence
Representative Public ID F22H10.4 NCBI
Target Description F22H10.4 /REP_DB=WormBase Gene ID /WP=CE09573 /TR=Q94190 /GB=AAB09101.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078294(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078294 NCBI Caenorhabditis elegans F22H10.4 (F22H10.4) mRNA, complete cds. 11/11 None
SNAP00000018980 ENSEMBL cdna:SNAP chromosome:CEL140:X:16684327:16686954:-1 11/11 None
GENEFINDER00000018988 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16684327:16688138:-1 11/11 None
F22H10.4 ENSEMBL cdna:known chromosome:CEL140:X:16684327:16685620:-1 gene:F22H10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16684326-16685620(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F22H10.4
Entrez Gene 184874 Entrez gene
SwissProt Q94190 EMBL-EBI
WormBase CE09573 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB09102 Hypothetical protein F22H10.5 [Caenorhabditis elegans] ref|NP_510696.1| F22H10.5 [Caenorhabditis elegans] 1.0E-168
blast AAB09101 Hypothetical protein F22H10.4 [Caenorhabditis elegans] ref|NP_510695.1| F22H10.4 [Caenorhabditis elegans] 1.0E-135
blast AAB09101 Hypothetical protein F22H10.4 [Caenorhabditis elegans] ref|NP_510695.1| F22H10.4 [Caenorhabditis elegans] 1.0E-123
blast AAB09102 Hypothetical protein F22H10.5 [Caenorhabditis elegans] ref|NP_510696.1| F22H10.5 [Caenorhabditis elegans] 1.0E-122
blast AAN73854 Hypothetical protein Y40A1A.1 [Caenorhabditis elegans] ref|NP_001024960.1| Y40A1A.1 [Caenorhabditis elegans] 1.0E-89
blast AAN73854 Hypothetical protein Y40A1A.1 [Caenorhabditis elegans] ref|NP_001024960.1| Y40A1A.1 [Caenorhabditis elegans] 3.0E-64
blast CAB07580 Hypothetical protein F13A7.7 [Caenorhabditis elegans] ref|NP_507138.1| F13A7.7 [Caenorhabditis elegans] 2.0E-53
Sequence
Target Sequence 
>C. ELEGANS:184405_AT
gactgacgaacttcttccggatgatttgatcaacagtttctgtgacaagttacaacttgc
ctatgggtatgaaattgaaggaatgttctctatgcaatacttgaaagtggaaaatacggc
cgatgtgcaagctcgaattacgggacagaacccggttgctcagattctactcgacagtag
tcgtgctcattacatcctgttattctacaactcagacaagaacttcatagcgatttatga
cagtctgcagagattcgatgcggatggaaacccgatagtatccgaaaatgtttgcaaaca
agtatcagttatgtttgggcaaatatttgaacgtcaaattccttgcaccgtggacattaa
ctatgagcaacagacagacggatactcgtgtggatacagagcgatcggagctctggttga
tctggctcgaagaagaaacccgtgcacatcaacaattcgtatatcagcaataagagactt
gctagatacagttttaagaacagcaagctcgaggaaaagtctattccaatcagccgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTGACGAACTTCTTCCGGATGAT 477 373 141 Antisense
GGAATGTTCTCTATGCAATACTTGA 233 533 220 Antisense
ATACGGCCGATGTGCAAGCTCGAAT 678 21 254 Antisense
GGACAGAACCCGGTTGCTCAGATTC 706 517 283 Antisense
GTTGCTCAGATTCTACTCGACAGTA 446 439 295 Antisense
CAGTAGTCGTGCTCATTACATCCTG 593 205 315 Antisense
ACATCCTGTTATTCTACAACTCAGA 679 105 332 Antisense
GAACGTCAAATTCCTTGCACCGTGG 127 347 469 Antisense
GGAGCTCTGGTTGATCTGGCTCGAA 578 521 547 Antisense
AAACCCGTGCACATCAACAATTCGT 148 127 576 Antisense
GAAAAGTCTATTCCAATCAGCCGAA 649 353 654 Antisense
Sequence Source Affymetrix Proprietary Database